| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 18241 | 79 (1.290) | 61 (0.990) | 32/98 | NT | 54.2% | intergenic (+80/+252) | nhaR/rpsT | DNA‑binding transcriptional activator/30S ribosomal subunit protein S20 |
| ? | Exported | 1502766 = | 24 (0.390) | intergenic (‑139/‑781) | lrhA/yfbQ | DNA‑binding transcriptional repressor/predicted aminotransferase | |||||
Only 100 of 217 total aligned reads displayed.
CCAAAGTTAAGGTTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAGTAGATATTCTTGT > Exported/18174‑18310 | ccAAAGTTAAGGTTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacctac > 1:255250/1‑71 (MQ=255) aaGTTAAGGTTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTc < 1:4907359/71‑1 (MQ=255) aGTTAAGGTTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTc > 1:1682707/1‑70 (MQ=255) actggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactca < 1:5137758‑M1/69‑15 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCaccttt < 1:2594360/58‑3 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:2093994‑M1/59‑5 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:2905206‑M1/59‑5 (MQ=255) tGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtccatgcga > 1:5010402‑M1/1‑55 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATcac < 1:76182/71‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATc < 1:4497109/69‑1 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATc < 1:5336068/69‑1 (MQ=255) agaacctCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtccatgcgatga < 1:4804581‑M1/68‑20 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATcaca < 1:3657564/71‑1 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtccatgcgatgaataa < 1:5249368‑M1/71‑24 (MQ=255) cTCAAAACCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttcc > 1:4277504‑M1/1‑47 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgact < 1:3228658‑M1/59‑13 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCa < 1:2815528/54‑1 (MQ=255) cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCa < 1:302461/54‑1 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCaccga < 1:5239455/48‑3 (MQ=255) tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtccatgcgatgaata < 1:4058703‑M1/68‑23 (MQ=255) taaaatcACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCgaaat > 1:4669084‑M1/2‑45 (MQ=255) taaaatcACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCgaaat > 1:1108891‑M1/2‑45 (MQ=255) taaaatCACCATCATACACTAAATCAGTAAGTTGGCAGCATTacc > 1:888100/2‑45 (MQ=255) taaaatCACCATCATACACTAAATCAGTAAGTTGGCAGCATTacc > 1:5641751/2‑45 (MQ=255) taaaatCACCATCATACACTAAATCAGTAAGTTGGCAGCATTacc > 1:1447460/2‑45 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacctac > 1:3194749/1‑48 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCacc > 1:2604573/1‑45 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtccatgcgatgaataaag > 1:1817938‑M1/1‑45 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtccatgcgatgaataaag > 1:5173619‑M1/1‑45 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtcc > 1:1351561‑M1/1‑45 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCa < 1:5098875/52‑1 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAtgtg > 1:253567/1‑57 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAtgtg > 1:1972242/1‑57 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATcc > 1:724024/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCATCATCACCaaaa < 1:4236710‑M1/48‑5 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttccgtt < 1:26482‑M1/70‑27 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:1868028‑M1/49‑6 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACaa > 1:2702995/1‑64 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACaa > 1:3709158/1‑64 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCa > 1:4350524/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCa > 1:2169762/1‑70 (MQ=255) aaatCACCATCATACACTAAATCAGTAAGTTGGCAGCATTaccg > 1:5521599/1‑43 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCaccttt < 1:3416640/46‑3 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCata < 1:3692404/71‑1 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:2739244‑M1/47‑6 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCatat < 1:1235860/71‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttccgttataa > 1:1924389‑M1/1‑41 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATAtt < 1:5668760/71‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATAtt < 1:2443039/71‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATAtt < 1:1158586/71‑1 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttccgttataat < 1:4098308‑M1/71‑32 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagc > 1:1289228‑M1/1‑40 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAAt > 1:185455/1‑49 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttccgttat < 1:3977412‑M1/64‑29 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCttt < 1:3462316/70‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTtg < 1:4370286/71‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTtg < 1:80356/71‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacat < 1:4545836‑M1/52‑18 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTtgt < 1:2035547/71‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtc < 1:4252800‑M1/43‑10 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtc < 1:1067901‑M1/43‑10 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacat < 1:3521058‑M1/51‑18 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATcc < 1:2913149/59‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTtgtg > 1:1020917/1‑71 (MQ=255) acataCACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttccgatataata > 1:4486248‑M1/2‑34 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCcgtattgtc < 1:3585881‑M1/42‑10 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcaac < 1:4599909‑M1/43‑12 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATca > 1:3124581/1‑49 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg < 1:4651805/71‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg < 1:5605165/71‑1 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttccgttataatgcctgaag > 1:4977797‑M1/1‑30 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACaa < 1:1143172/50‑1 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:572407/1‑70 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:4558359/1‑69 (MQ=255) cTAAATCAGTATGTTGGCAGCATCACCaaaaaagcgac < 1:3733479‑M1/38‑12 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCaaaaaagcgactca < 1:5675822‑M1/39‑15 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCt > 1:3667629/1‑71 (MQ=255) aTCAGTAAGTTGGCAGCATCACCcgtattgtccatgcgat < 1:2512573‑M1/40‑18 (MQ=255) aTCAGTAAGTTGGCAGCATCACCcgtattgtccatgcgat < 1:4546693‑M1/40‑18 (MQ=255) aTCAGTAAGTTGGCAGCATCACCaaaaaagcgactcacattgttccgttataatgcctg < 1:809700‑M1/59‑37 (MQ=255) aTCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:1089338/70‑1 (MQ=255) aTCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:3877103/70‑1 (MQ=255) aaGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGga > 1:4463186/1‑66 (MQ=255) aGTTGGCAGCATCACCaaaaaagcgactcacattgttccgttataatgcctgaagtagatcacagaatata < 1:2239879‑M1/71‑56 (MQ=255) aGTTGGCAGCATCACCaaaaaagcgactcacattgttccgttataatgcctgaagtagatcacagaatata > 1:5534736‑M1/1‑16 (MQ=255) aGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGAtt > 1:4760649/1‑69 (MQ=255) gTTGGCAGCATCACCaaaaaagcgactcacattgttccgttataa > 1:4316766‑M1/1‑15 (MQ=255) tGGCAGCATCACCaaaaaagcgactcacattgttccgttat < 1:2320338‑M1/41‑29 (MQ=255) tGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAg > 1:4676384/1‑69 (MQ=255) cagcaTCACCaaaaaagcgactcacattgttccgttataatgcctgaagtagatcacagaatatatcttca < 1:5058608‑M1/71‑62 (MQ=255) agcaTCACCTACCTCAATGTGTATCACAATATCCATATTCttt > 1:2726138/1‑43 (MQ=255) gcaTCACCaaaaaagcgactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagg > 1:1392882‑M1/1‑8 (MQ=255) caTCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAGTAGat > 1:3767281/1‑68 (MQ=255) cACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAGTAGATATTc > 1:2132008/1‑69 (MQ=255) acctacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAGTAGATATTCTTg > 1:3818229/1‑71 (MQ=255) aCCaaaaaagcgactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcg > 1:842760‑M1/1‑3 (MQ=255) aCCaaaaaagcgactcacattgttccgttataatgcctg < 1:3504940‑M1/39‑37 (MQ=255) aCCaaaaaagcgactcacattgttccgttataatgcc > 1:336880‑M1/1‑3 (MQ=255) cctacctCAATGTGTATCTCAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAGTAGat > 1:2501650/1‑63 (MQ=255) cctacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAGTAGATATTCTTGt > 1:1572166/1‑71 (MQ=255) | CCAAAGTTAAGGTTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGGAGATTGAGTAGATATTCTTGT > Exported/18174‑18310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |