BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Exported	= 299745	99 (1.610)	8 (0.150) +CGCTA	3/88	NT	10.6%	coding (641/1782 nt)	mdlB	fused predicted multidrug transporter subunits and ATP binding components of ABC superfamily
*	?	Exported	= 1746081	52 (0.850)	8 (0.150) +CGCTA	3/88	NT	10.6%	coding (500/1335 nt)	srmB	ATP‑dependent RNA helicase

Only 100 of 116 total aligned reads displayed.

GATTGTCCGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGTTCAC  >  Exported/299677‑299813

gATTGTCCGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCAt                                                                      >  1:2572855/1‑69 (MQ=255)

    gTCCGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGt                                                                >  1:2630818/1‑71 (MQ=255)

     tCCGTCGTGTGCGCGCCTATTTTGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGtt                                                               <  1:5045442/71‑1 (MQ=255)

     tCCGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGTCATGAGCGt                                                                <  1:199911/70‑1 (MQ=255)

     tCCGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGtt                                                               <  1:3690870/71‑1 (MQ=255)

     tCCGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGtt                                                               <  1:154067/71‑1 (MQ=255)

      ccGTCGTGTGCGCGCTTATCTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCg                                                                 <  1:3798265/68‑1 (MQ=255)

      ccGTCGTGTGCGCGCTTATCTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCg                                                                 <  1:1815542/68‑1 (MQ=255)

      ccGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGtt                                                               <  1:2467809/70‑1 (MQ=255)

        gtcgtGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGt                                                                <  1:2713628/67‑1 (MQ=255)

         tcgtGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATc                                                            <  1:1508826/70‑1 (MQ=255)

         tcgtGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATc                                                            <  1:2212896/70‑1 (MQ=255)

         tcgtGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATc                                                            >  1:5551574/1‑70 (MQ=255)

         tcgtGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATc                                                            <  1:3008053/70‑1 (MQ=255)

           gtgtGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCcag                                                         >  1:2064559/1‑71 (MQ=255)

           gtgtGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCcag                                                         >  1:3731808/1‑71 (MQ=255)

           gtgtGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCcag                                                         >  1:2334708/1‑71 (MQ=255)

           gtgtGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGAGTTATCcag                                                         >  1:4730365/1‑71 (MQ=255)

                cgcgcCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGtt                                                    >  1:3211021/1‑71 (MQ=255)

                  cgcCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTc                                                  <  1:664722/71‑1 (MQ=255)

                   gcCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCg                                                 <  1:5452630/71‑1 (MQ=255)

                      tATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGt                                                >  1:3585705/1‑69 (MQ=255)

                        tttGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATc                                                            <  1:4232510/55‑1 (MQ=255)

                        tttGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATc                                                            <  1:3803549/55‑1 (MQ=255)

                        tttGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTgag                                             >  1:4619280/1‑70 (MQ=255)

                        tttGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcag                                             <  1:5631218/70‑1 (MQ=255)

                        tttGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcag                                             <  1:3497335/70‑1 (MQ=255)

                         ttGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcag                                             <  1:2556733/69‑1 (MQ=255)

                          tGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcagcag                                          >  1:3554024/1‑71 (MQ=255)

                          tGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcagcag                                          >  1:1915870/1‑71 (MQ=255)

                          tGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcagca                                           <  1:3985116/70‑1 (MQ=255)

                               gATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGgcgc                                      >  1:2020930/1‑70 (MQ=255)

                               gATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGcgcg                                     <  1:3124480/71‑1 (MQ=255)

                                atatCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGa                                    <  1:1820355/71‑1 (MQ=255)

                                 tatCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGAt                                   <  1:1018095/71‑1 (MQ=255)

                                 tatCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGAt                                   >  1:1568124/1‑71 (MQ=255)

                                  atCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTc                                               >  1:324420/1‑58 (MQ=255)

                                   tCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCg                                                 <  1:5466160/55‑1 (MQ=255)

                                   tCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCg                                                 <  1:917299/55‑1 (MQ=255)

                                   tCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGAttt                                 <  1:2395554/71‑1 (MQ=255)

                                   tCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGAttt                                 <  1:1911217/71‑1 (MQ=255)

                                   tCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGAtt                                  <  1:5131377/70‑1 (MQ=255)

                                    cAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGAttt                                 <  1:1636800/70‑1 (MQ=255)

                                     aaCGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTg                                <  1:4595165/70‑1 (MQ=255)

                                       cgacgGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTgg                               >  1:2737616/1‑69 (MQ=255)

                                       cgacgGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTgg                               >  1:4176046/1‑69 (MQ=255)

                                       cgacgGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCg                             <  1:4338147/71‑1 (MQ=255)

                                           ggCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:3060467/71‑1 (MQ=255)

                                           ggCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:4545401/71‑1 (MQ=255)

                                             cTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:3444522/69‑1 (MQ=255)

                                             cTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTa                       <  1:3102231/71‑1 (MQ=255)

                                              tttAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTc                                               >  1:5560558/1‑46 (MQ=255)

                                              tttAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTc                                               >  1:5101330/1‑46 (MQ=255)

                                              tttAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTc                                               >  1:457706/1‑46 (MQ=255)

                                               ttAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGc                              <  1:2324942/62‑1 (MQ=255)

                                               ttAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATg                     >  1:5449804/1‑71 (MQ=255)

                                                tAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTa                       >  1:3292614/1‑68 (MQ=255)

                                                tAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTa                       >  1:1197379/1‑68 (MQ=255)

                                                tAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTAt                      <  1:2359851/69‑1 (MQ=255)

                                                tAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATgg                    >  1:191866/1‑71 (MQ=255)

                                                  aCGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATgggg                  <  1:2514924/71‑1 (MQ=255)

                                                   cGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGt                                                <  1:2831418/40‑1 (MQ=255)

                                                   cGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATggggg                 <  1:397477/71‑1 (MQ=255)

                                                   cGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATggggg                 <  1:5529679/71‑1 (MQ=255)

                                                    gAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcag                                             <  1:1312953/42‑1 (MQ=255)

                                                    gAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcag                                             <  1:5648991/42‑1 (MQ=255)

                                                    gAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTcag                                             <  1:2747510/42‑1 (MQ=255)

                                                    gAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTAt                      <  1:2923916/65‑1 (MQ=255)

                                                    gAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGa                <  1:2045947/71‑1 (MQ=255)

                                                       atcatcAATGGCATcgctaaatcccatatccagcatgcggtcggcctcat                                  <  1:3035133‑M1/50‑37 (MQ=255)

                                                       atcatcAATGGCATcgctaaatcccatatccagcatgcggt                                           <  1:1430596‑M1/41‑28 (MQ=255)

                                                       atcatcAATGGCATcgctaaatcccatatccagcatgcggt                                           <  1:1296963‑M1/41‑28 (MQ=255)

                                                       atcatcAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGc             <  1:403230/71‑1 (MQ=255)

                                                       atcatcAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTAAGGGGGAGGc             >  1:1221034/1‑71 (MQ=255)

                                                       atcatcAATGGCATGAGCGGTATCCAGCAGTTTCGTCACCAGGCGCGAt                                   <  1:1179165/49‑1 (MQ=255)

                                                        tcatcaATGGCATcgctaaatcccatatccagcatgcggt                                           <  1:4334062‑M1/40‑28 (MQ=255)

                                                        tcatcaATGGCATcgctaaatcccatatccagcatgcgg                                            <  1:2077166‑M1/39‑27 (MQ=255)

                                                        tcatcaATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGcc            <  1:1376282/71‑1 (MQ=255)

                                                         catcaATGGCATcgctaaatcccatatccagcatgcggtcggc                                       >  1:953336‑M1/1‑12 (MQ=255)

                                                         catcaATGGCATcgctaaatcccatatccagcatgcggtcggc                                       >  1:604080‑M1/1‑12 (MQ=255)

                                                         catcaATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:5003970/57‑1 (MQ=255)

                                                         catcaATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:5366105/57‑1 (MQ=255)

                                                         catcaATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:2043345/57‑1 (MQ=255)

                                                          atcaATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTa                       >  1:3792915/1‑58 (MQ=255)

                                                           tcaATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCGAGt         <  1:5535007/71‑1 (MQ=255)

                                                            caATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATgggg                  >  1:631438/1‑61 (MQ=255)

                                                            caATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTc        >  1:4900553/1‑71 (MQ=255)

                                                            caATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTc        >  1:4098416/1‑71 (MQ=255)

                                                             aaTGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCg       <  1:2833582/71‑1 (MQ=255)

                                                             aaTGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCg       <  1:2818327/71‑1 (MQ=255)

                                                              aTGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGt      <  1:3362351/71‑1 (MQ=255)

                                                              aTGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGt      <  1:5322978/71‑1 (MQ=255)

                                                               tGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:2933235/51‑1 (MQ=255)

                                                               tGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:5406650/51‑1 (MQ=255)

                                                               tGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACg                         <  1:4240466/51‑1 (MQ=255)

                                                               tGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGtt     <  1:1331593/71‑1 (MQ=255)

                                                                 gCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGTTca   <  1:3529096/71‑1 (MQ=255)

                                                                 gCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGTTca   <  1:4960819/71‑1 (MQ=255)

                                                                  cATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGTTcac  <  1:787258/71‑1 (MQ=255)

                                                                  cATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGTTca   <  1:2042215/70‑1 (MQ=255)

GATTGTCCGTCGTGTGCGCGCCTATTTGGCGGATATCAACGACGGCTTTAACGAAATCATCAATGGCATGAGCGTTATCCAGCAGTTTCGTCAGCAGGCGCGATTTGGCGAACGTATGGGGGAGGCCAGTCGTTCAC  >  Exported/299677‑299813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.