| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 379522 | 12 (0.200) | 17 (0.400) +AAGTGCGCTTTGTTT |
5/68 | NT | 49.7% | intergenic (‑115/‑260) | fepB/entC | iron‑enterobactin transporter subunit/isochorismate synthase 1 |
| ? | Exported | = 1444537 | 38 (0.620) | intergenic (+158/+42) | rcsB/rcsC | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
GCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAG > Exported/379462‑379588 | gcgcACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCa > 1:5316130/1‑61 (MQ=255) cccTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACATTAACCCTCAcc > 1:4778840/1‑71 (MQ=255) cccTCGCCCCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtttatgc > 1:1143562‑M1/1‑48 (MQ=255) cGCCCCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgttta > 1:4935384‑M1/1‑44 (MQ=255) cGCCCCTCCGGGGAGAGGGTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgttta > 1:4537736‑M1/1‑44 (MQ=255) gCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCa > 1:1666072/1‑42 (MQ=255) gCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCa > 1:1982935/1‑42 (MQ=255) cTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACa > 1:308033/1‑50 (MQ=255) tttGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGaa < 1:593443/47‑1 (MQ=255) tGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCa > 1:1343705/1‑35 (MQ=255) tGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGaa > 1:216813/1‑45 (MQ=255) ggAGAGGGTTAGGGTGAGGGGAACAGACAAGCAaagtgcgctttgtt < 1:817756‑M1/47‑15 (MQ=255) gagaGGGTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctgacgcgt > 1:3878065‑M1/1‑32 (MQ=255) agGGTTAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAg > 1:4075882/1‑71 (MQ=255) ggTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtt < 1:4189880‑M1/41‑15 (MQ=255) gTTAGGGTGAGGGGAACAGCCCAGCAaagtgcgctttgtttatgccagatgcgacgctga > 1:882915‑M1/1‑26 (MQ=255) gTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctgacgcgtcttatc < 1:5382962‑M1/71‑46 (MQ=255) gTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctga > 1:442425‑M1/1‑26 (MQ=255) gTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctga > 1:449163‑M1/1‑26 (MQ=255) gTTAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctga > 1:5184732‑M1/1‑26 (MQ=255) ttAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAgg > 1:4931320/1‑68 (MQ=255) ttAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAgg > 1:5216465/1‑68 (MQ=255) ttAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAgg > 1:5132788/1‑68 (MQ=255) tAGGGTGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctgacgcgtcttatctg > 1:504188‑M1/1‑24 (MQ=255) tGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctgacgcgtcttatc < 1:569061‑M1/64‑46 (MQ=255) tGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctgacgcgtcttatc < 1:2944624‑M1/64‑46 (MQ=255) tGAGGGGAACAGACCAGCAaagtgcgctttgtttatgccaga > 1:814046‑M1/1‑19 (MQ=255) aGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctgacgcgtcttatctggcctac < 1:1503857‑M1/70‑54 (MQ=255) aGGGGAACAGACCAGCAaagtgcgctttgtttatgccagatgcgacgctgacgcgtcttatctggcctac < 1:5409936‑M1/70‑54 (MQ=255) gggAACAGACCAGCAaagtgcgctttgtttatgcca < 1:3292134‑M1/36‑22 (MQ=255) gggAACAGACCAGCAaagtgcgctttgtttatgcca < 1:840549‑M1/36‑22 (MQ=255) aCAG‑CCAGCACTGGTGCGAACATTAACCCTCCCCCCAGACCTCACCCTGGAAGGgaga > 1:2271950/1‑58 (MQ=255) aCAG‑CCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAggggg > 1:4538686/1‑63 (MQ=255) cag‑ccagcACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAAc > 1:3605751/1‑68 (MQ=255) gaccagcaaagtgcgctttgtttatgccagatgcgacgctga > 1:2135539‑M1/3‑8 (MQ=255) gaccagcaaagtgcgctttgtttatgccagatgcgacgctga > 1:2948275‑M1/3‑8 (MQ=255) gaccagcaaagtgcgctttgtttatgccagatgcgacgctga > 1:1808865‑M1/3‑8 (MQ=255) g‑ccagcACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGgcgc < 1:5068991/71‑1 (MQ=255) agcACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGgaga > 1:1939898/1‑52 (MQ=255) agcACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAg > 1:3254618/1‑70 (MQ=255) gcACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAg < 1:716285/59‑1 (MQ=255) | GCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAG‑CCAGCACTGGTGCGAACATTAACCCTCACCCCAGCCCTCACCCTGGAAGGGAGAGGGGGCAGAACGGCGCAG > Exported/379462‑379588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |