New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported = 60480745 (0.730)3 (0.050) 3/88 NT 7.0% coding (880/1431 nt) ycaM predicted transporter
?Exported = 604816 39 (0.710)coding (889/1431 nt) ycaM predicted transporter

AATGACCAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATGCCCCGCTTA  >  Exported/604737‑604876
                                                                      |                                                                     
aaTGACCAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGG                                                                       >  1:5654438‑M1/1‑71 (MQ=255)
aaTGACCAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGG                                                                       >  1:3112790‑M1/1‑71 (MQ=255)
    aCCAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGtta                                                                    <  1:1603693/70‑3 (MQ=255)
    aCCAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGa                                                                    <  1:3648862/70‑1 (MQ=255)
    aCCAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGa                                                                    <  1:2054824/70‑1 (MQ=255)
     ccAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGAt                                                                   <  1:5372029/70‑1 (MQ=255)
       aaCGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTa                                                                <  1:4135913/71‑1 (MQ=255)
        aCGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTAc                                                               >  1:25469/1‑71 (MQ=255)
        aCGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTAc                                                               >  1:4896538/1‑71 (MQ=255)
        aCGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTAc                                                               >  1:2023835/1‑71 (MQ=255)
               gTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGcgtaaatcaccatta                                                        <  1:661538‑M1/71‑16 (MQ=255)
                tATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGc                                                       >  1:2484626/1‑71 (MQ=255)
                 aTTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGc                                                             <  1:2860375‑M2/64‑2 (MQ=255)
                 aTTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGc                                                             <  1:1180390‑M2/64‑2 (MQ=255)
                 aTTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGc                                                       >  1:401792/1‑70 (MQ=255)
                  ttACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGcgtaaatcaccattaaag                                                     >  1:2185402‑M1/1‑53 (MQ=255)
                  ttACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGcgtaaatcaccattaaa                                                      <  1:2408674‑M1/70‑18 (MQ=255)
                  ttACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCg                                                      >  1:4891890/1‑70 (MQ=255)
                     cGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATa                                                  <  1:4817883/71‑1 (MQ=255)
                      gCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATAc                                                 <  1:5594846/71‑1 (MQ=255)
                       ccTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATAcc                                                >  1:620508/1‑71 (MQ=255)
                           tCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGAttt                                                                 >  1:3871858/1‑50 (MQ=255)
                           tCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTa                                                                >  1:1780140/1‑51 (MQ=255)
                           tCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCt                                              <  1:3736514/69‑1 (MQ=255)
                           tCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCt                                              <  1:669311/69‑1 (MQ=255)
                           tCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTgg                                            >  1:4956656/1‑71 (MQ=255)
                           tCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTgg                                            >  1:3063922/1‑71 (MQ=255)
                               aaGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGAtt                                                                  >  1:2327473/1‑45 (MQ=255)
                                 gCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAg                                      >  1:5091099/1‑71 (MQ=255)
                                 gCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAg                                      <  1:1902338/71‑1 (MQ=255)
                                         aGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAgcggcg                              >  1:1822089/1‑71 (MQ=255)
                                         aGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAgcggcg                              >  1:3439785/1‑71 (MQ=255)
                                          gTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGgcgc                             >  1:4110169/1‑71 (MQ=255)
                                           tATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCg                                                      <  1:1188212/45‑1 (MQ=255)
                                            aTTACAACATGGGTAATACTTTAATGGTGATTTACGc                                                             >  1:5141576‑M2/1‑36 (MQ=255)
                                            aTTACAACATGGGTAATACTTTAATGGTGATTTACGc                                                             >  1:4423556‑M2/1‑36 (MQ=255)
                                            aTTACAACATGGGTAATACTTTAATGGTGATTTACGc                                                             >  1:4090014‑M2/1‑36 (MQ=255)
                                             ttACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAg                                   <  1:2952279/62‑1 (MQ=255)
                                             ttACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTgg                          <  1:3028519/71‑1 (MQ=255)
                                             ttACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTg                           <  1:3063807/70‑1 (MQ=255)
                                               acaacaTGGGTAATACTTTAATGGTGATTTACGCCATTGCGaa                                                    >  1:1275894/1‑43 (MQ=255)
                                               acaacaTGGGTAATACTTTAATGGTGATTTACGCCATTGCGaa                                                    >  1:185238/1‑43 (MQ=255)
                                               acaacaTGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTa                                    >  1:2220966/1‑59 (MQ=255)
                                               acaacaTGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAgcg                                 >  1:4629001/1‑62 (MQ=255)
                                                caacaTGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTAt                       <  1:232059/71‑1 (MQ=255)
                                                    aTGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATtctc                   <  1:56492/71‑1 (MQ=255)
                                                         tAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTg              <  1:3218368/71‑1 (MQ=255)
                                                          aaTACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTgg                          >  1:4816548/1‑58 (MQ=255)
                                                            tACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTa                        >  1:4952242/1‑58 (MQ=255)
                                                            tACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATg           >  1:578607/1‑71 (MQ=255)
                                                              cTTTAATGGTGATTTACGccattaaagtattacccatgttgtaatactcgcccagcttctgaaaggcgtaa         >  1:2185402‑M2/1‑18 (MQ=255)
                                                              cTTTAATGGTGATTTACGCCATTGCGAATACCCTgg                                            <  1:4527419/36‑1 (MQ=255)
                                                               tttAATGGTGATTTACGccattaaagtattacccatgttgtaatactcgcccagcttctgaaaggcgtaa         <  1:2408674‑M2/70‑54 (MQ=255)
                                                               tttAATGGTGATTTACGCCATTGCGAATACCCTggg                                           <  1:1222327/36‑1 (MQ=255)
                                                               tttAATGGTGATTTACGCCATTGCGAATACCCTggg                                           <  1:2953379/36‑1 (MQ=255)
                                                               tttAATGGTGATTTACGCCATTGCGAATACCCTggg                                           <  1:1669058/36‑1 (MQ=255)
                                                               tttAATGGTGATTTACGCCATTGCGAATACCCTGGGACa                                        <  1:1261733/39‑1 (MQ=255)
                                                               tttAATGGTGATTTACGCCATTGCGAATACCCTGGGACa                                        <  1:3560438/39‑1 (MQ=255)
                                                               tttAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATGccc        >  1:2867367/1‑71 (MQ=255)
                                                                 tAATGGTGATTTACGccattaaagtattacccatgttgtaatactcgcccagcttctgaaaggcgtaatac      <  1:661538‑M2/71‑57 (MQ=255)
                                                                 tAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATg           >  1:5578511/1‑66 (MQ=255)
                                                                 tAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATGcccc       <  1:5431881/70‑1 (MQ=255)
                                                                 tAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATGCCCCg      >  1:4380179/1‑71 (MQ=255)
                                                                  aaTGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGAtt               >  1:3568932/1‑61 (MQ=255)
                                                                     ggTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTgg                          <  1:2116328/47‑1 (MQ=255)
                                                                      gcgtaaatcaccattaaagtattacccatgttgtaatactcgcccagcttctgaaaggcgtaat        <  1:2860375‑M1/64‑64 (MQ=255)
                                                                      gcgtaaatcaccattaaagtattacccatgttgtaatactcgcccagcttctgaaaggcgtaat        <  1:1180390‑M1/64‑64 (MQ=255)
                                                                      gcgtaaatcaccattaaagtattacccatgttgtaat                                   >  1:5141576‑M1/1‑1 (MQ=255)
                                                                      gcgtaaatcaccattaaagtattacccatgttgtaat                                   >  1:4423556‑M1/1‑1 (MQ=255)
                                                                      gcgtaaatcaccattaaagtattacccatgttgtaat                                   >  1:4090014‑M1/1‑1 (MQ=255)
                                                                      gTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATGCCCCGCTTa  <  1:5607679/70‑1 (MQ=255)
                                                                      |                                                                     
AATGACCAACGGTCAGTATTACGCCTTTCAGAAGCTGGGCGAGTATTACAACATGGGTAATACTTTAATGGTGATTTACGCCATTGCGAATACCCTGGGACAAGTAGCGGCGCTGGTATTCTCGATTGATGCCCCGCTTA  >  Exported/604737‑604876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.