| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 385232 = | 40 (0.650) | 14 (0.270) +AAGAGATG |
5/82 | NT | 29.3% | coding (442/2106 nt) | cstA | carbon starvation protein |
| ? | Exported | 1163269 = | 41 (0.670) | coding (64/549 nt) | ynjA | conserved hypothetical protein | |||||
ATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGTTTATCTTTTATCTGGTGT > Exported/1163199‑1163338 | aTGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCAtcgtc < 1:1686723/71‑1 (MQ=255) ccTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGc > 1:4741345/1‑70 (MQ=255) aTGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCAtt < 1:3473904/70‑1 (MQ=255) tttACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCg < 1:4373032/71‑1 (MQ=255) tACAGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAg > 1:5476000/1‑71 (MQ=255) aCCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAg < 1:5569981/70‑1 (MQ=255) aCCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAg < 1:3992355/70‑1 (MQ=255) aCCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAg < 1:2962238/70‑1 (MQ=255) aCCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGAATCGTCGCCATTACGGCGAg < 1:4750155/70‑1 (MQ=255) tAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCg < 1:4650460/59‑1 (MQ=255) gCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGcccc < 1:5295859/71‑1 (MQ=255) gCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGcccc < 1:4333562/71‑1 (MQ=255) gCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGccc < 1:3547189/70‑1 (MQ=255) gCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGccc > 1:3295343/1‑70 (MQ=255) aaaTTCCTTTAATTTTACGTCCACAGGCGTGGCTGCAtcgtc > 1:5546839/1‑42 (MQ=255) ctggtcccatctcttctttgatcatctcaccaagagatgCGCCAt < 1:4448854‑M2/6‑1 (MQ=255) ctggtcccatctcttctttgatcatctcaccaagagatgCGCCAt < 1:4267046‑M2/6‑1 (MQ=255) ctggtcccatctcttctttgatcatctcaccaagagatgCGCCAt < 1:511134‑M2/6‑1 (MQ=255) ctggtcccatctcttctttgatcatctcaccaagagatgCGCCATTACGGc < 1:857612‑M2/12‑1 (MQ=255) aTTCCTTTAATTTTACGTCCACAGGCGTGGCTGCAtcgtc > 1:2350756/1‑40 (MQ=255) aTTCCTTTAATTTTACGTCCACAGGCGTGGCTGCAtcgtc > 1:5673876/1‑40 (MQ=255) aTTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTa > 1:2975145/1‑47 (MQ=255) aTTCCTATAATTTTACGTCCACAGGCGTGGCTGCAtcgtc > 1:3195764/1‑40 (MQ=255) ttCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGc < 1:265261/71‑1 (MQ=255) ttCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGc < 1:1159570/71‑1 (MQ=255) tggtcccatctcttctttgatcatctcaccaagagatgCGCCAt > 1:2087755‑M2/39‑44 (MQ=255) ccTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCa > 1:548087/1‑41 (MQ=255) ccTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCa > 1:492530/1‑41 (MQ=255) ccTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCa > 1:909809/1‑41 (MQ=255) ccTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCa > 1:3384617/1‑41 (MQ=255) cTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCtgg > 1:1257312/1‑71 (MQ=255) cTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCtgg > 1:4707586/1‑71 (MQ=255) cTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCtgg > 1:2483555/1‑71 (MQ=255) tttAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCg < 1:2544935/47‑1 (MQ=255) tAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAg > 1:4924419/1‑47 (MQ=255) tAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCtggtgg > 1:2732477/1‑71 (MQ=255) aaTTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTa > 1:2627400/1‑39 (MQ=255) tctcttctttgatcatctcaccaagagatgCGCCa > 1:4054219‑M2/31‑35 (MQ=255) aTTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTc > 1:3570777/1‑61 (MQ=255) aTTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTc > 1:3868822/1‑61 (MQ=255) ttttACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCg < 1:2207272/42‑1 (MQ=255) ctcttctttgatcatctcaccaagagatgCGCCATTACGGCGa < 1:4256615‑M2/14‑1 (MQ=255) tcttctttgatcatctcaccaagagatgCGCCATTa > 1:3596421‑M2/29‑36 (MQ=255) tcttctttgatcatctcaccaagagatgCGCCATTACGGCGAg > 1:3106716‑M2/29‑43 (MQ=255) tcttctttgatcatctcaccaagagatgCGCCATTACGGCGAg > 1:3695404‑M2/29‑43 (MQ=255) ttctttgatcatctcaccaagagatgCGCCATTACGGc < 1:475511‑M2/12‑1 (MQ=255) aCGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGTCgg < 1:1628357/70‑1 (MQ=255) ctttgatcatctcaccaagagatgCGCCATTACGGCGAg > 1:2846759‑M2/25‑39 (MQ=255) ctttgatcatctcaccaagagatgCGCCATTACGGCGAg > 1:5621722‑M2/25‑39 (MQ=255) ctttgatcatctcaccaagagatgCGCCATTACGGCGAg > 1:3188056‑M2/25‑39 (MQ=255) ctttgatcatctcaccaagagatgCGCCATTACGGCGAg > 1:1745845‑M2/25‑39 (MQ=255) cGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGa < 1:3846079/70‑1 (MQ=255) cacaGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCg > 1:4090582/1‑71 (MQ=255) caGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtt > 1:4063804/1‑71 (MQ=255) ggCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGttta < 1:5028002/71‑1 (MQ=255) tGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatctt < 1:5113218/71‑1 (MQ=255) tGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatctt < 1:1613423/71‑1 (MQ=255) ggCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatcttt > 1:4222572/1‑71 (MQ=255) gCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatctttt < 1:4653120/71‑1 (MQ=255) gCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatcttt > 1:390392/1‑70 (MQ=255) gCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatcttt > 1:1186836/1‑70 (MQ=255) cTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatctttta < 1:4388810/71‑1 (MQ=255) cTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatctttta < 1:2293456/71‑1 (MQ=255) gCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatct < 1:327738/65‑1 (MQ=255) cATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGTGGCGGATCCCGtttatcttttatc < 1:4727234/70‑1 (MQ=255) cATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatcttttatc < 1:4012140/70‑1 (MQ=255) gtcgCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatctttta > 1:1956158/1‑64 (MQ=255) gtcgCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGtttatctttta > 1:1274846/1‑64 (MQ=255) tcgCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGTTTATCTTTTATCTGgtgt < 1:522483/71‑1 (MQ=255) | ATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTAAGCCCCATTCGCTGGTGGGGGCGGATCCCGTTTATCTTTTATCTGGTGT > Exported/1163199‑1163338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |