| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 932321 | 56 (0.910) | 16 (0.310) +TTTTTCA |
10/84 | NT | 31.1% | intergenic (‑106/‑183) | yddG/fdnG | predicted methyl viologen efflux pump/formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| ? | Exported | = 2823597 | 27 (0.440) | intergenic (+342/+616) | nrfG/pheU | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG/tRNA‑Phe | |||||
GCCCTGGCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGA > Exported/2823528‑2823665 | gCCCTGGCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCataa > 1:932012/1‑71 (MQ=255)gCCCTGGCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAt < 1:3120933‑M2/71‑2 (MQ=255) ggCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAAGGGCGCTCCATTGAGGAAGTCATTCATAtga < 1:2689946‑M2/68‑4 (MQ=255) ggCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtga < 1:4843520‑M2/68‑4 (MQ=255) ggCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtga < 1:4222153‑M2/68‑4 (MQ=255) ggCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtga < 1:4886240‑M2/68‑4 (MQ=255) ggCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtga < 1:947193‑M2/68‑4 (MQ=255) ggCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtga < 1:5605749‑M2/68‑4 (MQ=255) ggCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtg < 1:3574437‑M2/67‑3 (MQ=255) gCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaa < 1:1487471‑M2/71‑8 (MQ=255) gCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaa > 1:3405285‑M2/1‑64 (MQ=255) tATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatat > 1:2428235‑M2/1‑60 (MQ=255) tGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataa < 1:476087‑M2/70‑13 (MQ=255) tGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataa < 1:3956473‑M2/70‑13 (MQ=255) tGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataa < 1:1823715‑M2/70‑13 (MQ=255) tGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatata > 1:1932230‑M2/1‑58 (MQ=255) tGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatata > 1:712777‑M2/1‑58 (MQ=255) tGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATT‑AGGAAGTCATTCATAtgaaaaatataaa < 1:3453362‑M2/70‑14 (MQ=255) gTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatat > 1:3749787‑M2/1‑57 (MQ=255) gTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatat > 1:3742937‑M2/1‑57 (MQ=255) gTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaa > 1:4810666‑M2/1‑57 (MQ=255) gTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaa > 1:1810550‑M2/1‑57 (MQ=255) tCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaa > 1:1897708‑M2/1‑56 (MQ=255) tCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAAc < 1:4881700/64‑1 (MQ=255) cACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaa > 1:1217131‑M2/1‑55 (MQ=255) aCGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGaaa > 1:2465695/1‑61 (MQ=255) aCGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGa > 1:2276044/1‑70 (MQ=255) aCGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGa > 1:2616557/1‑70 (MQ=255) cGTTCTCGCGTTTCTTAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCAt < 1:985473/65‑1 (MQ=255) cGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaa < 1:2868759‑M2/67‑15 (MQ=255) cGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCAt < 1:4510942/65‑1 (MQ=255) cGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCAt < 1:950210/65‑1 (MQ=255) cGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCAt < 1:1481293/65‑1 (MQ=255) ttCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaattcagc < 1:4510137‑M2/71‑21 (MQ=255) ttCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaattcagc < 1:1718343‑M2/71‑21 (MQ=255) ttCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaa > 1:2438063‑M2/1‑51 (MQ=255) ttCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAt < 1:5608385‑M2/52‑2 (MQ=255) tctcGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaa < 1:3528240‑M2/57‑8 (MQ=255) ctcGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAgg > 1:5280766/1‑70 (MQ=255) tcGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaa > 1:180031‑M2/1‑48 (MQ=255) gcgTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaattc < 1:4609117‑M2/63‑18 (MQ=255) gcgTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaattc < 1:5150994‑M2/63‑18 (MQ=255) gTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAatga < 1:2625829/71‑1 (MQ=255) tCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaaatt < 1:4161186‑M2/57‑17 (MQ=255) cTGAACTGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaa < 1:2460‑M2/53‑14 (MQ=255) cTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAtgaaaaatataaa < 1:3779308‑M2/53‑14 (MQ=255) cTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGaa < 1:3508528/64‑1 (MQ=255) cgcTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCcaca < 1:2655658/71‑1 (MQ=255) cTCCATTGAGGAAGTCATTCATAtgaaaaatataa > 1:4561791‑M2/1‑23 (MQ=255) cTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAat < 1:3501206/48‑1 (MQ=255) ccATTGAGGAAGTCATTCATAtgaaaaatataaaa < 1:1411766‑M2/35‑15 (MQ=255) ccATTGAGGAAGTCATTCATAtgaaaaatataaaa < 1:5266664‑M2/35‑15 (MQ=255) ccATTGAGGAAGTCATTCATAtgaaaaatataaaa < 1:2271470‑M2/35‑15 (MQ=255) aTTGAGGAAGTCATTCATAtgaaaaatataaaattcagc < 1:4641228‑M2/39‑21 (MQ=255) aTTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCgatga < 1:2810229/54‑1 (MQ=255) aTTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt < 1:4833029/71‑1 (MQ=255) aTTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt < 1:52914/71‑1 (MQ=255) aTTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt < 1:5120561/71‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAtt < 1:2710898/71‑1 (MQ=255) ttGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTAt > 1:5096634/1‑70 (MQ=255) gAGGAAGTCATTCATAtgaaaaatataaaattcagc < 1:901119‑M2/36‑21 (MQ=255) gAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGcta > 1:5247862/1‑46 (MQ=255) gAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCga > 1:68539/1‑48 (MQ=255) gAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCg > 1:3857910/1‑47 (MQ=255) gAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATa > 1:4500979/1‑53 (MQ=255) ggAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTa < 1:2707269/71‑1 (MQ=255) ggAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTa < 1:3574360/71‑1 (MQ=255) ttcatAATAGAAACTCATTCGAAAAGGGACTGATGc < 1:12144/36‑1 (MQ=255) ttcatAATAGAAACTCATTCGAAAAGGGAATGATGc < 1:1391102/36‑1 (MQ=255) gcatAATAGAAACTCATTCGAAAAGGGAATGATGCAATGATAAt > 1:3131411/2‑44 (MQ=255) gcatAATAGAAACTCATTCGAAAAGGGAATGATGCAATGATAATTGCCACAACCTATTTTTACCATCta > 1:3974930/2‑69 (MQ=255) catAATAGAAACTCATTCGAAAAGGGAATGATGCAATGATAATTGCCACAACCTATTTTTACCATCtata < 1:743277/70‑1 (MQ=255) catAATAGAAACTCATTCGAAAAGGGAATGATGCAATGATAATTGCCACAACCTATTTTTACCATCTATAg < 1:244275/71‑1 (MQ=255) ataataGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGa < 1:4371500/71‑1 (MQ=255) aataGAAACTCATTCGAAAAGGGAATGATGCAATGATAATTGCCACAACCTAtttt > 1:4744411/1‑56 (MQ=255) | GCCCTGGCAGTATGTCACGTTCTCGCGTTTCTGAACGGGGAACGGCGCTCCATTGAGGAAGTCATTCATAATAGAAACTCATTCGAAAAGGGAATGATGCGATGATAATTGCCACAACCTATTTTTACCATCTATAGA > Exported/2823528‑2823665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |