| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 835,013 | A→G | 21.9% | A1157A (GCA→GCG) ‡ | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 835,013 | 0 | A | G | 21.9% | 238.3 / 60.7 | 123 | A1157A (GCA→GCG) ‡ | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (44/52); new base G (16/11); total (60/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 131 total aligned reads displayed.
ACTGGATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAGC > Exported/834943‑835083 | aCTGGATTGAAGTCTTCAACAGAAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCa < 1:4126060/71‑1 (MQ=255) cTGGATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAg > 1:1206532/1‑71 (MQ=255) gATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAgg < 1:234117/69‑1 (MQ=255) gATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAgg < 1:3777645/69‑1 (MQ=255) gATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAgg < 1:4414455/69‑1 (MQ=255) gATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAgg < 1:4852113/69‑1 (MQ=255) gATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGa > 1:3396998/1‑71 (MQ=255) aGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGa > 1:1540180/1‑68 (MQ=255) aGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCa < 1:5112215/71‑1 (MQ=255) aGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCa < 1:114199/71‑1 (MQ=255) gtattCAACGCCAACGGCGCGCTGACTGCCCGCGCGGTGGTCAGCCAACGTGTACCGCCGGGCATGACCa > 1:4559720/4‑70 (MQ=255) gTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCat > 1:1337076/1‑71 (MQ=255) gTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCat > 1:4921961/1‑71 (MQ=255) gTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCat > 1:4671006/1‑71 (MQ=255) ttCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAgg < 1:3374290/59‑1 (MQ=255) ttCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAgg < 1:828517/59‑1 (MQ=255) ttCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCatgat > 1:1140239/1‑71 (MQ=255) cAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGAt > 1:783057/1‑60 (MQ=255) cAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGAt > 1:1074713/1‑60 (MQ=255) cAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTAcc < 1:3832943/71‑1 (MQ=255) gccAACGGCGCGCTGACTGCCCGCGCGGTGGTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTATCa > 1:1251324/3‑71 (MQ=255) aaCGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCAcgc > 1:1958381/1‑71 (MQ=255) aaCGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCAcgc > 1:906405/1‑71 (MQ=255) aCGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAg < 1:3711934/48‑1 (MQ=255) aCGGCGCGCTGACTGCCCGCGCGGTGGTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTat > 1:2708417/1‑64 (MQ=255) aCGGCGCGCTGACTGCCCGCGCGGTGGTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTat > 1:2962100/1‑64 (MQ=255) aCGGCGCGCTGACTGCCCGCGCGGTGGTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTat > 1:1890195/1‑64 (MQ=255) aCGGCGCGCTGACTGCCCGCGCGGTGGTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTATCAcgcc > 1:3788152/1‑70 (MQ=255) cGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATg < 1:2474331/52‑1 (MQ=255) tGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAgg < 1:859508/71‑1 (MQ=255) ctGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACg > 1:447976/1‑71 (MQ=255) tGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTTCGGCAGGGATGACCATGATGTACCACGCGCAGGAACg > 1:4915988/1‑70 (MQ=255) gACTGCCCGTGCGGTTGTCAGGCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTa > 1:4388736/1‑71 (MQ=255) gACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTa > 1:2540680/1‑71 (MQ=255) aCTGCCCGCGCGGTGGTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCAt > 1:91440/1‑71 (MQ=255) tGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCatgatg < 1:836604/49‑1 (MQ=255) cccGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCg < 1:661469/69‑1 (MQ=255) cccGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGtt < 1:4116101/71‑1 (MQ=255) cccGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGt > 1:2246713/1‑70 (MQ=255) cccGCGCGGTGGTCAACCAACGTGTACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCAttat > 1:45183/1‑67 (MQ=255) ccGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGt < 1:1621651/64‑1 (MQ=255) ccGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGt < 1:3891855/64‑1 (MQ=255) ccGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGt < 1:3707454/64‑1 (MQ=255) gTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTAt < 1:2908133/64‑1 (MQ=255) tGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCa < 1:2461041/38‑1 (MQ=255) tGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTa > 1:293482/1‑45 (MQ=255) tGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTa > 1:641543/1‑45 (MQ=255) tGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTa > 1:1371684/1‑45 (MQ=255) tGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGtt < 1:3040612/67‑1 (MQ=255) tGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGtt < 1:2860641/67‑1 (MQ=255) tGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAAcc > 1:2168996/1‑71 (MQ=255) gCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAAcct > 1:1216563/1‑71 (MQ=255) cGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAAcctg > 1:3045363/1‑71 (MQ=255) cGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAAcctg > 1:4223642/1‑71 (MQ=255) ttGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAAcctgcct < 1:2602551/71‑1 (MQ=255) ttGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAAcctgcct < 1:1044911/71‑1 (MQ=255) gTCAGCCAGCGTGTTCCGGCAGGGATGACCatgatg > 1:1405320/1‑36 (MQ=255) gTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACg > 1:1033878/1‑53 (MQ=255) gTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTgg > 1:4585703/1‑71 (MQ=255) gTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTATCACGCCCa < 1:2518405/47‑1 (MQ=16) gTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTATCACGCCCa < 1:4638057/47‑1 (MQ=16) gTCAGCCAACGTGTACCGCCGGGCATGACCATGATGTATCACGCCCa < 1:3277177/47‑1 (MQ=16) tCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGtt < 1:745313/59‑1 (MQ=255) tCAGCCAACGTGTACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCAt < 1:3224699/55‑1 (MQ=255) cagccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGtt > 1:4710332/1‑71 (MQ=255) agccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTc > 1:168575/1‑71 (MQ=255) agccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTc > 1:2082186/1‑71 (MQ=255) agccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTc > 1:832669/1‑71 (MQ=255) agccaacGTGTACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCATTATGAATATTCCTGGTTc > 1:3183756/1‑71 (MQ=255) gccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTa < 1:4065311/57‑1 (MQ=255) gccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTa < 1:5384197/57‑1 (MQ=255) gccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTa < 1:2997136/57‑1 (MQ=255) ccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCgg < 1:4492449/71‑1 (MQ=255) ccagcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCgg < 1:641250/71‑1 (MQ=255) ccaacGTGTACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCATTATGAATATTCCTGGTTCgg < 1:3500068/71‑1 (MQ=255) agcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGa > 1:1111952/1‑70 (MQ=255) agcGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGa < 1:5320507/70‑1 (MQ=255) aacGTGTACCGCCGGGCATGACCATGATGTATCACGCCCAgg < 1:442422/40‑1 (MQ=12) aacGTGTACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCATTATGAATATTCCTGGTTCg < 1:1771948/66‑1 (MQ=255) cGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCgg < 1:3043868/67‑1 (MQ=255) cGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCgg < 1:2805172/67‑1 (MQ=255) cGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCgg < 1:5510869/67‑1 (MQ=255) gtgtACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCATTATGAATATTCCTGGTTCGGaagta < 1:4552860/71‑4 (MQ=255) gtgtACCGCCGGGCATGACCATGATGTATCACGCCCAGGAACGCATTATGAATATTCCTGGTTCGGaagt > 1:540723/1‑68 (MQ=255) tgtTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGt < 1:4901642/48‑1 (MQ=255) tgtTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGt < 1:5269924/48‑1 (MQ=255) tgtTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGt < 1:4029514/48‑1 (MQ=255) ttCCGGCAGGGATGACCATGATGTACCACGCGCAg > 1:5210523/1‑35 (MQ=255) ttCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTAcc > 1:3714975/1‑71 (MQ=255) ccGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTAccc < 1:266157/70‑1 (MQ=255) ccGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTAccc > 1:5149989/1‑70 (MQ=255) ccGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTAccc > 1:1956105/1‑70 (MQ=255) cGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCaa < 1:100192/71‑1 (MQ=255) cGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCa < 1:2256105/70‑1 (MQ=255) cAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAg < 1:5439251/71‑1 (MQ=255) aGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAGc < 1:711814/71‑1 (MQ=255) aGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAGc > 1:5220430/1‑71 (MQ=255) aGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAGc > 1:2105595/1‑71 (MQ=255) aGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAGc < 1:4290125/71‑1 (MQ=255) aGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAGc < 1:3324322/71‑1 (MQ=255) | ACTGGATTGAAGTCTTCAACAGCAACGGTGCTCTGACTGCCCGTGCGGTTGTCAGCCAGCGTGTTCCGGCAGGGATGACCATGATGTACCACGCGCAGGAACGTATCGTTAACCTGCCTGGTTCGGAAATTACCCAACAGC > Exported/834943‑835083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |