| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 218,169 | G→C | 23.4% | L52L (CTG→CTC) | yafF → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 218,169 | 0 | G | C | 23.4% | 237.7 / 72.4 | 130 | L52L (CTG→CTC) | yafF | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (58/41); new base C (16/14); total (75/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 134 total aligned reads displayed.
AGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGTCCTTA > Exported/218105‑218228 | ataaGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTc < 1:3974561/68‑1 (MQ=255)ataaGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGt > 1:4955145/3‑69 (MQ=255) aaGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAg > 1:3483338/1‑70 (MQ=255) aGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGt < 1:4680723/70‑1 (MQ=255) aGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGt > 1:3987554/1‑70 (MQ=255) ggTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTcc < 1:3881365/71‑1 (MQ=255) tATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCtt < 1:2451934/71‑1 (MQ=255) ttCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATTTGGCGTCAGTCCTTGc < 1:1664669/71‑1 (MQ=255) ttCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAg < 1:1008257/64‑1 (MQ=255) ttCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAg < 1:531635/64‑1 (MQ=255) ttCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCtta < 1:1008818/70‑2 (MQ=255) tCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGt < 1:592374/60‑1 (MQ=255) tCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCg > 1:5050505/1‑71 (MQ=255) cAAGGCATGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTACgg > 1:2166309/1‑71 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTCCTTGCgg > 1:4845463/1‑71 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTCCTTGCgg > 1:2815696/1‑71 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCg < 1:1015791/70‑1 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:3382194/1‑61 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:1116609/1‑61 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCttac > 1:5580842/1‑67 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:1789837/1‑71 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:380270/1‑71 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:3109827/1‑71 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:2598466/1‑71 (MQ=255) cAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:1346359/1‑71 (MQ=255) aaGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCgg < 1:5237182/70‑1 (MQ=255) aaGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:1717743/1‑60 (MQ=255) ggCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTACGGGGa < 1:4380476/71‑1 (MQ=255) gCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAg > 1:548341/1‑71 (MQ=255) gggTTAAGACGTAAGATGCGAAAAGCAGCCATGGATAGAAACTATCTAGCGTCAGTCCTTGCGGGGAGCgg > 1:3351741/1‑71 (MQ=255) gTTAAGACGTAAGATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTCCTTGCgggg < 1:5216980/64‑1 (MQ=255) ttAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCggg < 1:710175/62‑1 (MQ=255) ttAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGc > 1:3009295/1‑70 (MQ=255) ttAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCt > 1:3987943/1‑71 (MQ=255) ttAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCt > 1:5076748/1‑71 (MQ=255) ttAAGACGTAAGATGCGAAAAGAAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCggg < 1:3304238/62‑1 (MQ=255) tAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCtt < 1:4626194/56‑1 (MQ=255) aaGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCtt < 1:2727779/70‑1 (MQ=255) aaGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:2894872/1‑49 (MQ=255) aaGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:4586445/1‑49 (MQ=255) aaGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTc > 1:3918495/1‑52 (MQ=255) aaGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTg > 1:1125942/1‑56 (MQ=255) aaGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTg > 1:852468/1‑56 (MQ=255) aaGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCttt > 1:899542/1‑71 (MQ=255) gACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCg > 1:3774724/1‑71 (MQ=255) aCGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTGGCGGGGAGCGGGCTTTCgt < 1:3962684/71‑1 (MQ=255) aCGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgt < 1:5643780/71‑1 (MQ=255) cGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGc > 1:745403/1‑53 (MQ=255) cGTAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgta < 1:2202383/71‑1 (MQ=255) tAAGATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTCCTTGCg < 1:664308/52‑1 (MQ=255) tAAGATGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgtaa < 1:4927959/70‑2 (MQ=255) tAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgtag > 1:1978372/1‑70 (MQ=255) tAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTACgggg < 1:3460643/55‑1 (MQ=255) aaGATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTCCTTGCGGGGAGCGGGCTTTc > 1:4112011/1‑65 (MQ=255) aaGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgta > 1:3841719/1‑68 (MQ=255) aGATGCGAAAAGCAGCCATGGACAGAAACTATCTgg > 1:345136/1‑36 (MQ=255) gATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCa < 1:1311927/40‑1 (MQ=255) gATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCa < 1:5604824/40‑1 (MQ=255) gATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTc < 1:2275215/43‑1 (MQ=255) gATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTc < 1:1664192/43‑1 (MQ=255) gATGCGAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGTc < 1:3547129/43‑1 (MQ=255) gATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:5440118/1‑40 (MQ=255) gATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:4168556/1‑40 (MQ=255) gATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCa > 1:2913806/1‑40 (MQ=255) gATGCGAAAAGCAGCCATCGACAGAAACTACCTGGCGTc > 1:1177256/1‑39 (MQ=255) aTGCGAAAAGCAGCCATGGACAGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCg > 1:5043737/1‑63 (MQ=255) aTGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTACg < 1:2830334/48‑1 (MQ=255) aTGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTACg < 1:2024620/48‑1 (MQ=255) gAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGt > 1:3422703/1‑37 (MQ=37) gAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGt > 1:3020164/1‑37 (MQ=37) gAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGt > 1:2245327/1‑37 (MQ=37) gAAAAGCAGCCATGGATAGAAACTATCTCGCGTCAGt > 1:5230840/1‑37 (MQ=37) gAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgtagta > 1:654207/1‑64 (MQ=255) aaaaGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:4200298/1‑44 (MQ=255) aaaaGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:2010563/1‑44 (MQ=255) aaaaGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:3215063/1‑44 (MQ=255) aaGCAGCCATGGATAGAAACTATCTCGCGTCAGTCCTTGCggg < 1:4944522/43‑1 (MQ=255) aaGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCgg > 1:640366/1‑42 (MQ=255) aaGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTACGGGGAGCgg > 1:2270936/1‑49 (MQ=255) aaGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTACGGGGAGCg > 1:1994317/1‑48 (MQ=255) gcagcCATGGACAGAAACTACCTGGCGTCAGTCCTTGCg < 1:4232697/39‑1 (MQ=255) gcagcCATGGACAGAAACTACCTGGCGTCAGTCCTTACGGGGAGCGGGCTTTc > 1:454470/1‑53 (MQ=255) ccATGGACAGAAACTATCTGGCGTCAGTCCTTGCgg < 1:1481279/36‑1 (MQ=255) tGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGt < 1:32265/71‑1 (MQ=255) gACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGa < 1:269346/59‑1 (MQ=255) gACAGAAACTACCTGGCGTCAGTCCTTACGGGGAGCGGGCTTTCgtaat > 1:4749352/1‑47 (MQ=39) aCAGAAACTACCTGGCGTCAGTCCTTACGGGGAGCGGGCTTTCgtaat < 1:1560499/48‑3 (MQ=39) cAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCttt > 1:4446192/1‑41 (MQ=255) cAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGAct > 1:1316173/1‑59 (MQ=255) aGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATTCCCCGCCTCTcccc > 1:2861394/1‑64 (MQ=255) aGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGTCCTTa < 1:1925957/71‑1 (MQ=255) aGAAACTACCTGGCGTCAGTCCTTACGGGGAGCGGGCTTTc > 1:5542994/1‑41 (MQ=255) aGAAACTACCTGGCGTCAGTCCTTACGGGGAGCGGGCTTTc > 1:4544381/1‑41 (MQ=255) gAAACTACCTGGCGTCAGTCCTTACGGGGAGCGGGCtt < 1:5284256/38‑1 (MQ=255) tACCTGACGTCAGTCCTTGCGGGGAGCAGGCTTTCgtaaa < 1:1559698/40‑3 (MQ=255) tACCTGACGTCAGTCCTTGCGGGGAGCAGGCTTTCgtaaa < 1:4986723/40‑3 (MQ=255) aCCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTaa < 1:5487540/41‑1 (MQ=255) ggCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGCCTCTcccc > 1:3545847/1‑53 (MQ=255) ggCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGTc > 1:1927930/1‑56 (MQ=255) ggCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACACCGa > 1:4164319/1‑45 (MQ=255) | AGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGTCCTTA > Exported/218105‑218228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |