| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,439,849 | G→A | 11.7% | T151T (ACC→ACT) | ompC ← | outer membrane porin protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,439,849 | 0 | G | A | 11.7% | 425.6 / 33.2 | 153 | T151T (ACC→ACT) | ompC | outer membrane porin protein C |
| Reads supporting (aligned to +/- strand): ref base G (74/61); new base A (11/7); total (85/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01 | |||||||||||
Only 100 of 163 total aligned reads displayed.
GTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGAATTCTGG > Exported/1439780‑1439917 | gTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAgg > 1:4051572/1‑71 (MQ=255) tttttACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAgg > 1:3235629/1‑70 (MQ=255) ttgttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGt < 1:4163262/68‑1 (MQ=9) ttattACCCTGATATTGCAAAGCAAAGTTCAAGCCATCGACCTAACCAAAGAAGCCATTGTTACGGTAGGt > 1:5490431/4‑71 (MQ=255) tattACCCTGATATTGCAAAGCAAAGTTCAAGCCATCGACCTAACCAAAGAAGCCATTGTTACGGTAGGtt > 1:2472725/3‑70 (MQ=255) tttACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTcg > 1:2293748/1‑71 (MQ=255) gttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTcg > 1:2122834/2‑71 (MQ=255) gttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTcg > 1:1540319/2‑71 (MQ=255) gttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTc < 1:4359271/69‑1 (MQ=255) gttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTc < 1:1903393/69‑1 (MQ=255) ttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTcgc < 1:5324948/71‑1 (MQ=9) ttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTcgc < 1:3486189/71‑1 (MQ=9) ttACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTcgc < 1:399180/71‑1 (MQ=9) tACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTcgc > 1:1925733/1‑70 (MQ=9) tACCTTGATACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTcgc > 1:1432098/1‑70 (MQ=9) aCCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTcgcg > 1:77650/1‑70 (MQ=255) aCCCTGATATTGCAAAGCAAAGTTCAAGCCATCGACCTAACCAAAGAAGCCATTGTTACGGTAGGTtgcaa > 1:4607544/1‑69 (MQ=9) cccTGATATTGCAAAGCAAAGTTCAAGCCATCGACCTAACCAAAGAAGCCATTGTTACGGTAGGTtgcaa < 1:446008/70‑3 (MQ=255) ccTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAg < 1:1428588/71‑1 (MQ=255) tgatACTGCACCGCGAAGTTCAGACCATTTACCAGACCGAAGAAATCAGTATTACGATAAGTCGCGACGc > 1:4504168/4‑70 (MQ=9) ggTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCg > 1:1261773/1‑71 (MQ=255) gTACTGAACAGCAAAGTTCAGGCCTTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGt < 1:2621710/71‑1 (MQ=255) gTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGcc < 1:888923/69‑1 (MQ=255) gTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGcc < 1:1149380/69‑1 (MQ=255) gTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCg < 1:4788670/70‑1 (MQ=255) gTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGt < 1:4839570/71‑1 (MQ=255) gTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGt > 1:2312503/1‑71 (MQ=255) tACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGtt < 1:2037482/71‑1 (MQ=255) tACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGtt < 1:5506495/71‑1 (MQ=255) aCTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGaa > 1:5538641/1‑64 (MQ=255) tGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGc < 1:5188134/64‑1 (MQ=255) tGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGtt < 1:1523523/68‑1 (MQ=255) aaCAGCAAAGTTCAGGCCGTGAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGaa > 1:4705293/1‑60 (MQ=255) aaCAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGaa > 1:1589268/1‑60 (MQ=255) aaCAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCAc > 1:4472473/1‑71 (MQ=255) cAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACgc < 1:5579924/71‑1 (MQ=255) cAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACgc < 1:1538613/71‑1 (MQ=255) aaGCAAAGTTCAAGCCATCGACCTAACCAAAGAAGCCATTGTTACGGTAgg > 1:3733531/2‑51 (MQ=255) aaGCAAAGTTCAAGCCATCGACCTAACCAAAGAAGCCATTGTTACGGTAgg > 1:1010531/2‑51 (MQ=255) aaGCAAAGTTCAAGCCATCGACCTAACCAAAGAAGCCATTGTTACGGTAgg > 1:5216332/2‑51 (MQ=255) gCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGt > 1:4543191/1‑61 (MQ=255) aaaGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACgctgct > 1:3365846/1‑71 (MQ=255) cAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATg > 1:3495420/1‑70 (MQ=255) cAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATg > 1:798367/1‑70 (MQ=255) ggCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAg < 1:3414457/71‑1 (MQ=255) ggCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAg < 1:5264623/71‑1 (MQ=255) ccGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGt > 1:3921721/1‑70 (MQ=255) cGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTg < 1:5125337/71‑1 (MQ=255) cGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTg > 1:625381/1‑71 (MQ=255) tCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGt > 1:1187373/1‑70 (MQ=255) aaCCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGt > 1:3217950/1‑68 (MQ=255) aaCCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCa < 1:2939990/70‑1 (MQ=255) ccAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGaa > 1:3472507/1‑71 (MQ=255) aGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCa > 1:3307747/1‑55 (MQ=255) aGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCa > 1:2420254/1‑55 (MQ=255) aGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAAcc < 1:3328028/71‑1 (MQ=255) aGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGATGCa > 1:5355164/1‑55 (MQ=255) aGACCGAAGAAATCAGTATTACGATAAGTCGCGACGcca > 1:4220449/1‑38 (MQ=16) gACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCg < 1:1953240/38‑1 (MQ=255) gACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCg < 1:1005961/38‑1 (MQ=255) gACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAg < 1:941465/66‑1 (MQ=255) gACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAg < 1:2373476/66‑1 (MQ=255) aCCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCg > 1:790553/1‑70 (MQ=255) aCCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGt < 1:849701/71‑1 (MQ=255) caaagaagCCATTGTTACGGTAGGTTGCAACACCATTAGCACGACCGTTCATGAAGTTGTc > 1:507267/3‑61 (MQ=255) cGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTa < 1:2526094/70‑1 (MQ=255) aagaagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGgt < 1:3831121/71‑1 (MQ=255) aagaagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGgt < 1:4895985/71‑1 (MQ=255) gaagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGgtgt < 1:227010/71‑1 (MQ=255) gaagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGgtgt < 1:3775624/71‑1 (MQ=255) gaagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGCAGgtgt < 1:3925278/71‑1 (MQ=255) aagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCa > 1:2246723/1‑36 (MQ=255) aagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAgg > 1:1728379/1‑67 (MQ=255) aagTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAgg > 1:5080704/1‑67 (MQ=255) agTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAgg > 1:2317360/1‑66 (MQ=255) agTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTca < 1:1767335/71‑1 (MQ=255) gTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAg < 1:1603331/49‑1 (MQ=255) tCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTcacc < 1:5667455/71‑1 (MQ=255) aGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTcaccac > 1:4193063/1‑71 (MQ=255) tgtTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTcaccac > 1:5532442/1‑69 (MQ=255) tgtTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCg < 1:5025742/71‑1 (MQ=255) gtTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCg < 1:1697544/70‑1 (MQ=255) gtTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCg < 1:1748050/70‑1 (MQ=255) ttACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAg > 1:2271071/1‑42 (MQ=255) ttACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGaa > 1:3110492/1‑71 (MQ=255) ttACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGaa > 1:5091959/1‑71 (MQ=255) ttACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGaa > 1:4269019/1‑71 (MQ=255) ttACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGaa > 1:4275655/1‑71 (MQ=255) tACGGTAGGTTGCAACACCATTAGCACGACCGTTCATGAAGTTGTCAgc > 1:3579195/1‑48 (MQ=255) aCGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCa > 1:5430378/1‑46 (MQ=255) aCGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCa > 1:4099531/1‑46 (MQ=255) aCGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAAc > 1:2572171/1‑50 (MQ=255) aCGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAg > 1:692815/1‑55 (MQ=255) aCGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGgtgt > 1:4590462/1‑59 (MQ=255) aCGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGgtgt > 1:1723250/1‑59 (MQ=255) aCGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGAAt < 1:4391044/70‑1 (MQ=255) gTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGt < 1:526922/41‑1 (MQ=255) gTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTa < 1:1780360/51‑1 (MQ=255) tAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGAATTCTgg > 1:4328975/1‑71 (MQ=255) ggTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAgg > 1:2978229/1‑50 (MQ=255) | GTTTTTACCCTGGTACTGAACAGCAAAGTTCAGGCCGTCAACCAGACCGAAGAAGTCAGTGTTACGGTAGGTCGCGAAGCCGTTACCACGCTGCTGCATGAAGTTGTCAGAACCGTAGGTGTCACCACCGAATTCTGG > Exported/1439780‑1439917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |