| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,486,279 | T→C | 73.4% | T345A (ACA→GCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,486,279 | 0 | T | C | 73.4% | 143.6 / 54.4 | 90 | T345A (ACA→GCA) | nuoN | NADH:ubiquinone oxidoreductase, membrane subunit N |
| Reads supporting (aligned to +/- strand): ref base T (11/13); new base C (41/25); total (52/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
AGGTAGTAGTAGAGGCCGATTGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATACCGGCCA > Exported/1486215‑1486344 | aGGTAGTAGTAGAGGCCGATTGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGac < 1:465882/71‑1 (MQ=255) tagtagtagAGGCCGATTGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACacc < 1:571675/71‑1 (MQ=255) gagGCCGATTGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGc > 1:2203860/1‑69 (MQ=255) aTTGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTa < 1:1196300/71‑1 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGacac < 1:4936390/54‑1 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGacac < 1:2261615/54‑1 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACg > 1:2562355/1‑68 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACg > 1:888655/1‑68 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAg < 1:3641067/71‑1 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAg < 1:113793/71‑1 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAg < 1:4741051/71‑1 (MQ=255) ttGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAg < 1:833214/71‑1 (MQ=255) tGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAg > 1:4470077/1‑70 (MQ=255) gCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGt < 1:5677166/67‑1 (MQ=255) gCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAg > 1:3939694/1‑69 (MQ=255) gCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGaa > 1:4215687/1‑71 (MQ=255) gCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGaa > 1:3141997/1‑71 (MQ=255) gCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGaa > 1:877617/1‑71 (MQ=255) gCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGaa > 1:807442/1‑71 (MQ=255) ccGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCt > 1:4324676/1‑45 (MQ=255) gAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCt > 1:2579300/1‑43 (MQ=255) gAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCt > 1:2784383/1‑43 (MQ=255) ccGACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTAcc < 1:5695087/71‑1 (MQ=255) gACAACCACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGa < 1:893858/71‑1 (MQ=255) gACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGa < 1:4372873/71‑1 (MQ=255) gACAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGa < 1:2649885/71‑1 (MQ=255) aCAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGa > 1:875106/1‑70 (MQ=255) aCAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGa > 1:5173577/1‑70 (MQ=255) cAACCACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGaa > 1:1291728/1‑61 (MQ=255) cAACCACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGaa > 1:899619/1‑61 (MQ=255) cAACCACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGCCCGCCAGCACGTAGAACTTACCGAt > 1:596858/1‑70 (MQ=255) ccACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAg < 1:3684528/71‑1 (MQ=255) ccACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAg > 1:1910787/1‑71 (MQ=255) ccACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAg > 1:5580125/1‑71 (MQ=255) ccACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAGCTTACCGATAAAg > 1:2786717/1‑71 (MQ=255) ccACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAg > 1:159628/1‑71 (MQ=255) ccACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAg > 1:4277515/1‑71 (MQ=255) cACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGa < 1:2156217/56‑1 (MQ=255) cACGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGc > 1:1141653/1‑71 (MQ=255) aCGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGa < 1:4393999/55‑1 (MQ=255) cGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGcc > 1:2871616/1‑70 (MQ=255) cGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGcc > 1:1025791/1‑70 (MQ=255) cGGCACCCACCAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCAAGTAGAACTTACCGATAAAGcc > 1:1513051/1‑70 (MQ=255) ggCACCCACCAGCCACCACAAGTGTGCCTGGacac < 1:2296334/35‑1 (MQ=255) cacccaccAGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTAc < 1:1180411/57‑1 (MQ=255) acccaccAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCg < 1:1928214/71‑1 (MQ=255) ccaccaGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGt > 1:2866063/1‑70 (MQ=255) ccaccaGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGt > 1:595304/1‑70 (MQ=255) accaGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTAc > 1:37128/1‑52 (MQ=255) caGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGa < 1:2133470/53‑1 (MQ=255) aGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAg > 1:3483574/1‑42 (MQ=255) aGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAg > 1:710870/1‑42 (MQ=255) aGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAg > 1:1019941/1‑42 (MQ=255) aGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAg > 1:218230/1‑42 (MQ=255) aGCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTAc > 1:4119223/1‑49 (MQ=255) aGCCACCACAAGTGTGCCTGGACACCGACCGACAGCACGTAGAACTTAc > 1:1343124/1‑49 (MQ=255) gCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACtt < 1:3090602/46‑1 (MQ=255) gCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACtt < 1:2748463/46‑1 (MQ=255) gCCACCACAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCAt < 1:1970177/67‑1 (MQ=255) ccaccaCAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACtt < 1:2279460/45‑1 (MQ=255) caccacAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGa > 1:281523/1‑70 (MQ=255) accacAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGcc < 1:2224333/55‑1 (MQ=255) accacAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATa < 1:4936013/71‑1 (MQ=255) ccacAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACt < 1:3538077/41‑1 (MQ=255) ccacAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACt < 1:5426285/41‑1 (MQ=255) ccacAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTc < 1:1430494/61‑1 (MQ=255) ccacAAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTc < 1:5235359/61‑1 (MQ=255) cacaAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGAt < 1:5426407/68‑1 (MQ=255) cacaAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGAt < 1:2391455/68‑1 (MQ=255) cacaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCgg < 1:1168344/65‑1 (MQ=255) cacaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCg > 1:987492/1‑64 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATaaa > 1:2100085/1‑49 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATaaa > 1:1313091/1‑49 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATaaa > 1:3301340/1‑49 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATaaa > 1:1593048/1‑49 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATaaa > 1:4703866/1‑49 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCg < 1:5552047/57‑1 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGt > 1:1165558/1‑58 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATa > 1:232052/1‑68 (MQ=255) acaAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATa > 1:2811155/1‑68 (MQ=255) caAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATAc > 1:1707496/1‑68 (MQ=255) caAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAg > 1:4836509/1‑54 (MQ=255) caAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAg > 1:1504087/1‑54 (MQ=255) caAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAg > 1:983892/1‑54 (MQ=255) caAGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATACCgg < 1:4804318/71‑1 (MQ=255) aaGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCggg > 1:2255620/1‑63 (MQ=255) aaGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGa > 1:5433109/1‑64 (MQ=255) aaGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATACCGGc < 1:3787586/71‑1 (MQ=255) aaGTGTGCCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATACCGGc < 1:5083173/71‑1 (MQ=255) aGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATACCGGc > 1:5489269/1‑70 (MQ=255) gtgcCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATACCGGCCa > 1:4014396/1‑69 (MQ=255) | AGGTAGTAGTAGAGGCCGATTGCCGAACCGACAACCACGGCACCCACCAGCCACCACAAGTGTGTCTGGACACCGACCGCCAGCACGTAGAACTTACCGATAAAGCCCAGCGTCATCGGGATACCGGCCA > Exported/1486215‑1486344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |