| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,990,234 | A→G | 70.5% | L76L (TTA→TTG) | mutY → | adenine DNA glycosylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,990,234 | 0 | A | G | 70.5% | 57.2 / 27.8 | 44 | L76L (TTA→TTG) | mutY | adenine DNA glycosylase |
| Reads supporting (aligned to +/- strand): ref base A (8/5); new base G (13/18); total (21/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTTTATGGCGCGCTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTGGCGACCTTA > Exported/1990167‑1990303 | gCTTTATGGCGCGCTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTgg < 1:3250390/71‑1 (MQ=255)gCTTTATGGCGCGCTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTgg < 1:506624/71‑1 (MQ=255) tGGCGCGCTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCgg < 1:1121892/70‑1 (MQ=255) tGGCGCGCTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCgg < 1:1853017/70‑1 (MQ=255) gcTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGc < 1:2316699/71‑1 (MQ=255) cTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCt < 1:80387/71‑1 (MQ=255) cTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCt < 1:4917634/71‑1 (MQ=255) tCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTa > 1:5110098/1‑70 (MQ=255) cccGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTAt < 1:2926930/70‑1 (MQ=255) ccGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTATGGa > 1:1016617/1‑55 (MQ=255) gACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACg > 1:4917724/1‑71 (MQ=255) ggTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGccc > 1:5493151/1‑71 (MQ=255) gTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTtgtg > 1:2470683/1‑47 (MQ=255) tGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCcgc < 1:104304/71‑1 (MQ=255) tGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTATGGACCGGGCTTGGCTAt < 1:1726608/62‑1 (MQ=255) gACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCcgcg > 1:4425030/1‑71 (MQ=255) aCCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCcgcgc > 1:198280/1‑71 (MQ=255) tctcGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCgcgcgcgc > 1:3293503/1‑70 (MQ=255) ctcGCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCaa > 1:1715202/1‑71 (MQ=255) gCCAATGCGCCGCTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCa < 1:4852843/67‑1 (MQ=255) gCCAATGCGCCGCTCGACGAAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCt < 1:5208161/71‑1 (MQ=255) gCCAATGCGCCGCTCGACGAAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCt > 1:414096/1‑71 (MQ=255) aTGCGCCGCTCGACGAAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCa > 1:2629534/1‑70 (MQ=255) cgccgcTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATaa < 1:2919316/70‑1 (MQ=255) cgccgcTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATaa < 1:4252385/70‑1 (MQ=255) gccgcTCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTAt < 1:941847/43‑1 (MQ=255) cgcTCGACGAAGTTCTCCACTTGTGGACCGGGCTTg < 1:363272/36‑1 (MQ=255) cgcTCGACGAAGTTCTCCACTTGTGGACCGGGCTTg < 1:3468342/36‑1 (MQ=255) cgcTCGACGAAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCg > 1:2549173/1‑71 (MQ=255) tCGACGAAGTTCTCCACTTGTGGACCGGGCTTGGCTATTa > 1:244156/1‑40 (MQ=255) cgacgaAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGccc > 1:5244287/1‑44 (MQ=255) gaAGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCacaaca < 1:3661540/71‑1 (MQ=255) gaAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGccc > 1:1412877/1‑40 (MQ=255) gaAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCcg > 1:3528880/1‑41 (MQ=255) gaAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCcg > 1:2628010/1‑41 (MQ=255) aaGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCacaac > 1:4749677/1‑69 (MQ=255) aGTTCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAg < 1:2155732/71‑1 (MQ=255) gTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGt < 1:1103200/71‑1 (MQ=255) ttCTCCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTg < 1:4189981/71‑1 (MQ=255) ctcCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTGGc > 1:476069/1‑71 (MQ=255) ctcCACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTGGc > 1:5511793/1‑71 (MQ=255) ctcCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCacaac < 1:5696520/64‑1 (MQ=255) ccACTTGTGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTGGCGa > 1:3146200/1‑71 (MQ=255) cACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTGGc < 1:4405362/68‑1 (MQ=255) tATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTGGCGACCTTa > 1:1374745/1‑71 (MQ=255) | GCTTTATGGCGCGCTTCCCGACGGTGACCGATCTCGCCAATGCGCCGCTCGACGAAGTTCTCCACTTATGGACCGGGCTTGGCTATTACGCCCGCGCGCGCAATCTGCATAAAGCGGCACAACAAGTGGCGACCTTA > Exported/1990167‑1990303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |