| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,094,801 | C→A | 9.7% | S17S (TCG→TCT) | tdcG ← | L‑serine dehydratase 3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,094,801 | 0 | C | A | 9.7% | 322.6 / 11.1 | 102 | S17S (TCG→TCT) | tdcG | L‑serine dehydratase 3 |
| Reads supporting (aligned to +/- strand): ref base C (37/55); new base A (7/3); total (44/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.58e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 105 total aligned reads displayed.
GGTTAATAAGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCC > Exported/2094732‑2094871 | ggTTAATAAGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCg < 1:1441762/71‑1 (MQ=255) gTTAATAAGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGa < 1:699096/71‑1 (MQ=255) ataaGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTg < 1:1327468/71‑1 (MQ=255) aaGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTg > 1:4823722/1‑69 (MQ=255) aGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGa < 1:3861389/70‑1 (MQ=255) aGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGa < 1:1862327/70‑1 (MQ=255) cTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCaa < 1:4652208/70‑1 (MQ=255) cTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAAt < 1:4763655/71‑1 (MQ=255) cTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAAt > 1:5313544/1‑71 (MQ=255) ttCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATcc > 1:5114875/1‑71 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATcc > 1:5202564/1‑70 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATcc < 1:1358814/70‑1 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGAACCAATcc > 1:4056668/1‑70 (MQ=255) tCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCACACGGTATGCGAACTGGAGGGACCAATcc > 1:491368/1‑70 (MQ=255) ccAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACt < 1:2402142/55‑1 (MQ=255) cAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGc > 1:5368591/1‑49 (MQ=255) aTCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCg < 1:2889229/44‑1 (MQ=255) tCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:4121931/71‑1 (MQ=255) tCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGa > 1:3134508/1‑70 (MQ=255) aaTAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa < 1:4592910/71‑1 (MQ=255) aaaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCg < 1:5395617/37‑1 (MQ=255) aaaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCg < 1:3587636/37‑1 (MQ=255) aaaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGa > 1:1471810/1‑44 (MQ=255) aaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:3942990/71‑1 (MQ=255) aaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:1765634/71‑1 (MQ=255) aaCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:1802592/71‑1 (MQ=255) aCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:4506995/70‑1 (MQ=255) aCTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGa < 1:218863/71‑1 (MQ=255) tttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAAt > 1:4217547/1‑49 (MQ=255) ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg > 1:3337653/1‑71 (MQ=255) ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg > 1:5202255/1‑71 (MQ=255) ttttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg > 1:2724242/1‑71 (MQ=255) tttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAAt > 1:5331385/1‑53 (MQ=255) tttCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAAt > 1:3459377/1‑53 (MQ=255) cGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACt < 1:3990211/70‑1 (MQ=255) cGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACt < 1:4448373/70‑1 (MQ=255) ggCATTCATTGGCCCCACGGTATGCGAACTGGAGGGAc > 1:249946/1‑38 (MQ=255) ggCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTaa < 1:3967628/71‑1 (MQ=255) gctttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAAt > 1:3441019/4‑71 (MQ=255) ctttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCTAAta > 1:569464/3‑62 (MQ=255) ctttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAAta > 1:4994076/3‑62 (MQ=255) ctttcattGGTCCAACGGTATGAGAACTGGAAGGGCAAATGCCGATTTTGAAAata > 1:2413606/3‑56 (MQ=255) tttcattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAAta > 1:2722853/2‑61 (MQ=255) attcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCa > 1:1953523/1‑71 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:2567559/50‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:1480598/57‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:4444206/57‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:4967718/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:4680636/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:5178284/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:2780132/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:4937353/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg < 1:4988320/61‑1 (MQ=255) ttcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCat < 1:1549673/71‑1 (MQ=255) tcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATc < 1:201504/55‑1 (MQ=255) tcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCata > 1:4600281/1‑71 (MQ=255) tcattGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCata > 1:185753/1‑71 (MQ=255) cattGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGaaaa > 1:2021963/1‑50 (MQ=255) attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCatat < 1:3673656/70‑1 (MQ=255) attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCatat < 1:3790774/70‑1 (MQ=255) attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc < 1:3152344/71‑1 (MQ=255) attGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc < 1:2866449/71‑1 (MQ=255) ttGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAATCatagga < 1:1323247/71‑4 (MQ=255) ttGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc < 1:4339447/70‑1 (MQ=255) tGGTCCAACGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAATATCGAATACGCTAATCatagga < 1:3516884/70‑4 (MQ=255) ggCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAatat > 1:335444/1‑49 (MQ=255) ggCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat > 1:3137799/1‑47 (MQ=255) ggCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCca < 1:1537781/70‑1 (MQ=255) ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGa < 1:697124/39‑1 (MQ=255) ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:4611387/47‑1 (MQ=255) ccACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACAccc > 1:5661671/1‑71 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTg < 1:5688508/37‑1 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTg < 1:4752548/37‑1 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat > 1:5219107/1‑42 (MQ=255) cACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCt > 1:3152767/1‑71 (MQ=255) aCGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:770185/1‑40 (MQ=255) aCGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:745586/1‑40 (MQ=255) aCGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATg > 1:4065286/1‑49 (MQ=255) aCGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCtg > 1:5020014/1‑70 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:4805529/37‑1 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGaa < 1:4042463/37‑1 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAatat > 1:2013054/1‑42 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc > 1:3286851/1‑61 (MQ=255) cGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCg < 1:4705420/71‑1 (MQ=255) cGGTATGAGAACTGGAAGGGCCAATGCCGATTTTGAAAat < 1:5658574/40‑1 (MQ=16) ggTATGAGAACTGGAAGGGCCAATGCCGATTTTGaaaa > 1:3166002/1‑38 (MQ=16) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:4926920/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:5399223/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:1508416/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGaaaa > 1:663403/1‑37 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAat > 1:1046720/1‑38 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGa < 1:2819036/71‑1 (MQ=255) gTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGa < 1:4223379/71‑1 (MQ=255) tATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGAt > 1:2882038/1‑71 (MQ=255) tGCGAACTGGAGGGACCAATCCCAATTTTGAAAat < 1:3104218/35‑1 (MQ=255) tGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGaa > 1:834518/1‑41 (MQ=255) gCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:1744917/38‑1 (MQ=255) gCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATc < 1:4857633/55‑1 (MQ=255) cGAACTGGAGGGACCAATCCCAATTTTGAAAATATCg < 1:3115342/37‑1 (MQ=255) cGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGcc > 1:2376258/1‑71 (MQ=255) | GGTTAATAAGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGTATGCGAACTGGAGGGACCAATCCCAATTTTGAAAATATCGAATGCACTAATCATATCCACACCCTCGGATTGCC > Exported/2094732‑2094871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |