| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,130,571 | A→C | 12.7% | S112A (TCG→GCG) | mtr ← | tryptophan transporter of high affinity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,130,571 | 0 | A | C | 12.7% | 203.1 / 24.3 | 94 | S112A (TCG→GCG) | mtr | tryptophan transporter of high affinity |
| Reads supporting (aligned to +/- strand): ref base A (34/48); new base C (4/8); total (38/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAAAACCAAAACCCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCAC > Exported/2130502‑2130640 | caaaaccaaaacCCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGaa > 1:1890710/1‑71 (MQ=255)caaaaccaaaacCCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGaa > 1:4043123/1‑71 (MQ=255) aaaaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAAc < 1:2965876/71‑1 (MQ=255) aaaccaaaaccCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAAc < 1:537069/70‑1 (MQ=255) aaaccCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGCACCACTgg > 1:596273/1‑70 (MQ=255) aaaccCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTgg > 1:1497140/1‑70 (MQ=255) accCGCCGCCCGTGCC‑GGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGa < 1:2547403/71‑1 (MQ=255) cgccgcCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGaaa < 1:5522184/71‑1 (MQ=255) gccgccCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAat < 1:3765078/71‑1 (MQ=255) ccGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGCTGCAGAATCGAACCACTGGCAGAAATATAgg < 1:5222305/71‑1 (MQ=255) ccGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGaaa > 1:5519024/1‑65 (MQ=255) ccGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAgg < 1:4635535/71‑1 (MQ=255) ccGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAgg < 1:4498647/71‑1 (MQ=255) gTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAgg < 1:455288/69‑1 (MQ=255) tGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGa < 1:4700963/48‑1 (MQ=255) tGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGa < 1:2013672/48‑1 (MQ=255) ccGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAg > 1:1114316/1‑71 (MQ=255) cGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAgg > 1:3219683/1‑71 (MQ=255) aCGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg > 1:1720400/1‑71 (MQ=255) tttAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTgg < 1:4526633/46‑1 (MQ=255) tttAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTgg < 1:1056247/46‑1 (MQ=255) tAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAg > 1:950589/1‑61 (MQ=255) tAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAg > 1:4870407/1‑61 (MQ=255) tAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAg > 1:3415538/1‑61 (MQ=255) gTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGc < 1:4085446/55‑1 (MQ=255) gTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGc < 1:5387522/55‑1 (MQ=255) gTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATag < 1:4904743/71‑1 (MQ=255) gACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAg > 1:2422352/1‑51 (MQ=255) aCATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATagag < 1:4527283/70‑1 (MQ=255) aCATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATagag < 1:1318336/70‑1 (MQ=255) aCATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATaga > 1:309727/1‑69 (MQ=255) cATCTCTGCGAATGTGTGATGCAGAATCGAACCACTGGCAGAAat < 1:3749111/45‑1 (MQ=255) cATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAat < 1:4657528/45‑1 (MQ=255) cATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAat < 1:1089298/45‑1 (MQ=255) cATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAat < 1:5214780/45‑1 (MQ=255) cATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAat < 1:2700391/45‑1 (MQ=255) cATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAat < 1:3082511/45‑1 (MQ=255) tctcTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:2468780/61‑1 (MQ=255) tctcTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:730225/61‑1 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAgg > 1:1716750/1‑52 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAgg > 1:2008580/1‑52 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGatat > 1:1895592/1‑61 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGatat > 1:1961994/1‑61 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGatat > 1:1395357/1‑61 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGatat > 1:4725327/1‑61 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:4985590/59‑1 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGat < 1:1504521/59‑1 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca > 1:4181047/1‑69 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca > 1:5024971/1‑69 (MQ=255) tGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca < 1:900020/67‑1 (MQ=255) tGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACaa < 1:3376644/68‑1 (MQ=255) cGAAGGTGTGATGCAGAATCGAACCACTGGCAGaa > 1:1254031/1‑35 (MQ=255) cGAAGGTGTGATGCAGAATCGAACCACTGGCAGaa > 1:4558262/1‑35 (MQ=255) cGAAGGTGTGATGCAGAATCGAACCACTGGCAGaa > 1:4770016/1‑35 (MQ=255) cGAAGGTGTGATGCAGAATCGAACCACTGGCAGaa > 1:1128755/1‑35 (MQ=255) aaGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAAt < 1:1850097/71‑1 (MQ=255) ggTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:2725584/71‑1 (MQ=255) ggTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:635539/71‑1 (MQ=255) gtgtGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGt < 1:3140290/44‑1 (MQ=255) gtgtGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGt < 1:1137105/44‑1 (MQ=255) gtgtGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1183978/71‑1 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:4441807/46‑1 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGcaca < 1:2728283/59‑1 (MQ=255) tgATGCAGAATCGAACCACTGGCAGAAATATAGGCAt < 1:5692294/37‑1 (MQ=255) tgATGCAGAATCGAACCACTGGCAGAAATATAGGCAt < 1:2806594/37‑1 (MQ=255) aTGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAAt > 1:838448/1‑63 (MQ=255) aTGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGc > 1:3914307/1‑71 (MQ=255) tGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGata < 1:1572467/45‑1 (MQ=255) tGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGata < 1:4511095/45‑1 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATgg < 1:3606152/62‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:5352501/71‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:2573442/71‑1 (MQ=255) aGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt < 1:4577236/71‑1 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACgaa > 1:2113700/3‑52 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACgaa > 1:4315429/3‑52 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACggt < 1:4399599/59‑2 (MQ=255) tgaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGtaa < 1:2464514/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:814313/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:126007/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2594640/61‑1 (MQ=255) gAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGtt > 1:4628389/1‑70 (MQ=255) gaTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAg > 1:1433660/2‑52 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATag < 1:545485/42‑1 (MQ=16) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:5186317/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:1718479/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:1227092/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:4250176/71‑2 (MQ=255) aTCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCAACGGTAATACCGCTGat < 1:4173012/71‑2 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaa < 1:1585121/59‑1 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:4458215/1‑70 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:2605545/1‑70 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGAc > 1:2932335/1‑70 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:3640919/1‑59 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:4121676/1‑59 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:3769785/1‑59 (MQ=255) cGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGaaa > 1:2291876/1‑59 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCa > 1:1514809/1‑70 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCAc > 1:1087905/1‑71 (MQ=255) | CAAAACCAAAACCCGCCGCCCGTGCCGGGACGTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCAC > Exported/2130502‑2130640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |