| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,220,218 | T→C | 35.0% | intergenic (+478/‑500) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,220,218 | 0 | T | C | 35.0% | 97.8 / 87.5 | 97 | intergenic (+478/‑500) | yhdH/accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| Reads supporting (aligned to +/- strand): ref base T (32/31); new base C (12/22); total (44/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.32e-01 | |||||||||||
Only 100 of 109 total aligned reads displayed.
ATTGGGTAATCCCCAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACC > Exported/2220148‑2220286 | aTTGGGTAATCCCCAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACattatt < 1:3386335/71‑1 (MQ=255)aTTGGGTAATCCCCAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACattatt < 1:5607574/71‑1 (MQ=255) ttGGGTAATCCCCAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACattatt > 1:2122867/1‑70 (MQ=255) ttGGGTAATCCCCAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTAttt < 1:2925540/71‑1 (MQ=255) aaTCCCCAGCAACCGCTGCGTAATGTCGTGGATCTTGTCGCGTTCCTGGCATCCCTACATTTTTTGTgg > 1:4540535/1‑69 (MQ=255) aTCCCCAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTc < 1:1818535/70‑1 (MQ=255) cccAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCtgtg < 1:2005162/71‑1 (MQ=255) cccAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCtgtg < 1:1736173/71‑1 (MQ=255) ctggCAACAGTTGCATAATTTCGTCTATCTTGTGGCGATTCTGGCCCCAATACATTATCTGTGGGCCGTGa < 1:4910396/68‑1 (MQ=255) ctggCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCcgtg > 1:4042929/4‑70 (MQ=255) cAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCtgtg > 1:3741447/1‑69 (MQ=255) ggCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCcgtg > 1:3262699/2‑68 (MQ=255) gCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGt > 1:3018610/1‑62 (MQ=255) gCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGt > 1:673363/1‑62 (MQ=255) gCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGt > 1:5648965/1‑62 (MQ=255) gCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGa < 1:1257394/71‑1 (MQ=255) gCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCcgtg > 1:1397027/1‑67 (MQ=255) aaCCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGAtt < 1:5545810/71‑1 (MQ=255) cGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtc > 1:2923897/1‑71 (MQ=255) gCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtct > 1:4713829/1‑71 (MQ=255) ttGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTAtttc < 1:431565/70‑1 (MQ=255) ttGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTAtttc < 1:2915009/70‑1 (MQ=255) cTGCGTAATGTCGTCTATCTTGTCGCGCTCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtct > 1:4510203/1‑70 (MQ=255) tGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCtgtg < 1:898184/59‑1 (MQ=255) tGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtctc < 1:1517157/70‑1 (MQ=255) tGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCa > 1:5541425/1‑71 (MQ=255) cGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCa < 1:1943736/69‑1 (MQ=255) cGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCa < 1:1744959/69‑1 (MQ=255) cGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCAt > 1:5020110/1‑70 (MQ=255) gTAATGTCGTCTCTCTTGTCGCGATCCTGGCATCCCTACATTATTTGTTGTCTGTGAAGATTATCTCATTg < 1:1870458/71‑1 (MQ=255) gTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTtgtg > 1:310254/1‑49 (MQ=255) gTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTg < 1:3085671/71‑1 (MQ=255) aaTGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTg > 1:917296/1‑69 (MQ=255) tttcgtcTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGaa < 1:1426304/52‑1 (MQ=255) tttcgtcTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGaa < 1:1332719/52‑1 (MQ=255) tttcgtcTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGa > 1:1970645/3‑56 (MQ=255) tttcgtcTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGa > 1:396614/3‑56 (MQ=255) tttcgtcTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGa > 1:3718100/3‑56 (MQ=255) tcgtcTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGa > 1:1127986/1‑54 (MQ=255) tcgtcTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGccg > 1:2110651/1‑70 (MQ=255) tcgtcTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGccc > 1:3997921/1‑71 (MQ=255) gtcTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGa > 1:2942814/1‑52 (MQ=255) gtcTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGa > 1:1761596/1‑52 (MQ=255) tcTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTc < 1:4592050/71‑1 (MQ=255) tATCTTGTCGCGATTCTGGCCCCAATACATTATCtg < 1:1120337/36‑1 (MQ=255) tATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtgt < 1:2807697/55‑3 (MQ=255) tATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtct < 1:1077216/55‑1 (MQ=255) tATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCCCAt > 1:5414755/1‑71 (MQ=255) aTCTTGTGGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTAttt < 1:3900014/54‑3 (MQ=255) tCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGaa > 1:3616423/1‑45 (MQ=255) tCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCa < 1:1933036/55‑1 (MQ=255) tCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCa < 1:1778168/55‑1 (MQ=255) tCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATc < 1:3981274/70‑1 (MQ=255) tCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGa < 1:5494708/44‑1 (MQ=255) tCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCa > 1:675890/1‑55 (MQ=255) tCTTGTCGCGATCCGGGCATCCCTACATTATTTGTGGTCTGTGa < 1:5676670/44‑1 (MQ=255) cTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGAt < 1:5350850/47‑1 (MQ=255) cTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGAt < 1:1378320/47‑1 (MQ=255) ttGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGAt < 1:3489104/46‑1 (MQ=255) ttGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGAt < 1:1299084/46‑1 (MQ=255) ttGTCGCGATCCTGGCATCCCTACATTATTTGTGGt > 1:303364/1‑36 (MQ=255) tGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGccc > 1:4032344/1‑61 (MQ=255) tGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGccc > 1:5464369/1‑61 (MQ=255) gTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCt < 1:465123/67‑1 (MQ=255) gTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGc > 1:1666235/1‑71 (MQ=255) gTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCtt < 1:483433/68‑1 (MQ=255) gTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCg < 1:876015/70‑1 (MQ=255) tCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGct > 1:610291/1‑70 (MQ=255) tCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGc < 1:5574589/70‑1 (MQ=255) cgATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTc < 1:2089726/59‑1 (MQ=255) cgATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTc < 1:3938216/59‑1 (MQ=255) aTCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGggct < 1:5189383/71‑1 (MQ=255) tGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtct < 1:141270/39‑1 (MQ=255) tGGCATCCCTACATTATTTGTGGTCTGTGAAGATTAtct < 1:968893/39‑1 (MQ=255) ggCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAg < 1:2581014/62‑1 (MQ=255) ggCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGggctggcgt > 1:61763/1‑69 (MQ=255) ggCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgctt > 1:4919699/1‑71 (MQ=255) ggCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgctt > 1:68418/1‑71 (MQ=255) gCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCa > 1:598487/1‑39 (MQ=255) gCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGggctggct < 1:3455878/69‑1 (MQ=255) gCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGggctggct < 1:84931/69‑1 (MQ=255) aTCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgctttt > 1:4336204/1‑70 (MQ=255) ccTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagc > 1:873650/1‑71 (MQ=255) tACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGccg < 1:5139796/41‑2 (MQ=16) tACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGccg < 1:905693/41‑2 (MQ=16) tACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGccg < 1:5179624/41‑2 (MQ=16) tACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTc < 1:2956533/44‑1 (MQ=16) tACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTc < 1:685174/44‑1 (MQ=16) tACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTc < 1:5512540/44‑1 (MQ=16) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagctttt > 1:4523401/1‑71 (MQ=255) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagctttt > 1:4123580/1‑71 (MQ=255) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagctttt > 1:4992352/1‑71 (MQ=255) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagctt < 1:1391394/69‑1 (MQ=255) cATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGgctgtactgctttt < 1:3746792/71‑1 (MQ=255) attattTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagcttttc < 1:2441561/71‑1 (MQ=255) attattTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagcttttc < 1:4611400/71‑1 (MQ=255) attattTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagctt < 1:4298870/68‑1 (MQ=255) ttatcTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCtac < 1:3175017/46‑3 (MQ=16) attTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCa > 1:2353023/1‑47 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCAcc > 1:606583/1‑71 (MQ=255) | ATTGGGTAATCCCCAGCAACCGCTGCGTAATGTCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACC > Exported/2220148‑2220286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |