| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,636,243 | G→A | 26.3% | intergenic (+63/‑35) | ugpB → / → ugpA | glycerol‑3‑phosphate transporter subunit/glycerol‑3‑phosphate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,636,243 | 0 | G | A | 26.3% | 120.2 / 44.8 | 76 | intergenic (+63/‑35) | ugpB/ugpA | glycerol‑3‑phosphate transporter subunit/glycerol‑3‑phosphate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (29/27); new base A (10/10); total (39/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
TCTTAATCAGTGTAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTCGCGCTGG > Exported/2636175‑2636313 | tCTTAATCAGTGTAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATaagcgaa < 1:5006102/71‑1 (MQ=255) aacgcctgatgcgacgctggcgcgtcttatcaggcctacacgctgcgatttTGTAGGCCGGATaagcaaag > 1:2528465‑M2/52‑71 (MQ=255) ttAATCAGTGTAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATaagcgaagc > 1:1437845/1‑71 (MQ=255) acgcctgatgcgacgctgacgcgtcttatctggcctacacgctgcgatttTGTAGGCCGGATaagcaaag < 1:1266928‑M2/20‑1 (MQ=255) gcctgatgcgacgctggcgcgtcttatcaggcctacgcgctgcgatttTGTAGGCCGGATAAGCAAAgcgc < 1:270646‑M2/23‑1 (MQ=255) gcctgatgcgacgctggcgcgtcttatcaggcctacacgctgcgatttTGTAGGCCGGATaagcaaagcg > 1:5269286‑M2/49‑70 (MQ=255) gcctgatgcgacgctgacgcgtcttatctggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAgcgc < 1:4307580‑M2/23‑1 (MQ=255) aaTCAGTGTAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATaagcgaagc < 1:589441/69‑1 (MQ=255) aaTCAGTGTAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATaagcgaagc < 1:1382265/69‑1 (MQ=255) cctgatgcgacgctggcgcgtcttatcaggcctacgcgctgcgatttTGTAGGCCGGATAAGCAAAGCGCa < 1:1028253‑M2/24‑1 (MQ=255) ctgatgcgacgctggcgcgtcttatcaggcctacgcgctgcgatttTGTAGGCCGGATAAGCAAAGCGCa < 1:3871861‑M2/24‑1 (MQ=255) tgatgcgacgctggcgcgtcttatcaggcctacgcgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATc > 1:4757524‑M2/46‑71 (MQ=255) gatgcgacgctgacgcgtcttatctggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCa > 1:3802728‑M2/45‑68 (MQ=255) aGTGTAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATcc > 1:3674514/1‑71 (MQ=255) tgtAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCgg < 1:3359110/71‑1 (MQ=255) tgtAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCgg < 1:3580218/71‑1 (MQ=255) tgtAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCgg < 1:2067953/71‑1 (MQ=255) gcgacgctggcgcgtcttatcaggcctacgcgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCgg > 1:1124834‑M2/42‑70 (MQ=255) cgacgctgacgcgtcttatctggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCGGca > 1:5385333‑M2/41‑71 (MQ=255) gacgctggcgcgtcttatcaggcctacgcgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCGgcat < 1:3170691‑M2/32‑2 (MQ=255) gacgctggcgcgtcttatcaggcctacgcgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCGgcat < 1:3128084‑M2/32‑2 (MQ=255) tGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATaagcgaagcg < 1:2086068/59‑1 (MQ=255) tGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAg > 1:1106203/1‑71 (MQ=255) gctggcgcgtcttatcaggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCGgcacg > 1:781071‑M2/37‑68 (MQ=255) tCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGtt > 1:4350278/1‑71 (MQ=255) tCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGt > 1:1105735/1‑70 (MQ=255) ctggcgcgtcttatcaggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCGgcacg < 1:4337157‑M2/33‑2 (MQ=255) ggATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGtt > 1:477951/1‑69 (MQ=255) tGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAgg > 1:1533721/1‑70 (MQ=255) tGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAgg > 1:4407920/1‑70 (MQ=255) tGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAgg > 1:78835/1‑70 (MQ=255) gCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAgg < 1:2126782/69‑1 (MQ=255) gCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAgg < 1:41093/69‑1 (MQ=255) tcttatctggcctacacgctgcgatttTGTAGGCCGGATAAGTAAAGCGCATCCgg < 1:239818‑M2/29‑1 (MQ=255) ttatcaggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCcggcacgaa > 1:3667330‑M2/26‑57 (MQ=255) ttatcaggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCcggcacgaa > 1:275120‑M2/26‑57 (MQ=255) ttatcaggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCcggcacgaa > 1:3674019‑M2/26‑57 (MQ=255) ttCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTaa > 1:2248718/1‑71 (MQ=255) tCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATaagcgaa < 1:3986098/43‑1 (MQ=255) atctggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCgg > 1:3957820‑M2/24‑52 (MQ=255) atctggcctacacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCgg > 1:182445‑M2/24‑52 (MQ=255) gCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAAtt < 1:1877587/66‑1 (MQ=255) cTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGt < 1:2769740/71‑1 (MQ=255) ttATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGt > 1:1940197/1‑70 (MQ=255) tCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAAt < 1:2887788/70‑1 (MQ=255) cacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCgg < 1:3349995‑M2/29‑1 (MQ=255) cacgctgcgatttTGTAGGCCGGATAAGCAAAGCGCATCCgg < 1:5572349‑M2/29‑1 (MQ=255) aCCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtcat < 1:2122513/71‑1 (MQ=255) aCCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtca < 1:5439324/70‑1 (MQ=255) ccTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtcatc < 1:2187801/71‑1 (MQ=255) cTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtcatca > 1:1918414/1‑71 (MQ=255) gCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTcatcat < 1:287537/69‑1 (MQ=255) gCATCGCGTATAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTcatcat < 1:3120013/69‑1 (MQ=255) tCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTa < 1:113643/56‑1 (MQ=255) gcgTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTATTGTCATCATCCCGTcc > 1:2552987/1‑71 (MQ=255) gcgTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtcat > 1:4562886/1‑61 (MQ=255) gcgTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATccc > 1:5169364/1‑67 (MQ=255) gcgTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTcc > 1:4201742/1‑71 (MQ=255) gcgTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTc < 1:884715/70‑1 (MQ=255) gcgTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTc < 1:2791723/70‑1 (MQ=255) gtgtAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTaa > 1:23604/1‑53 (MQ=255) tgtAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtcat < 1:1748185/58‑1 (MQ=255) gCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCatcatc < 1:3779586/57‑1 (MQ=255) gCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCatcatc < 1:4767240/57‑1 (MQ=255) gCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCatcatc < 1:2571221/57‑1 (MQ=255) gCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTcc > 1:2861230/1‑71 (MQ=255) gCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTcc > 1:5472103/1‑71 (MQ=255) ccGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCg > 1:1307498/1‑71 (MQ=255) ccGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCg > 1:3961788/1‑71 (MQ=255) ccGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCg > 1:1231063/1‑71 (MQ=255) ccGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCg > 1:2332703/1‑71 (MQ=255) ccGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCg > 1:4673509/1‑71 (MQ=255) cGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGc < 1:3455796/71‑1 (MQ=255) ggATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCt > 1:3950934/1‑71 (MQ=255) ggATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCt > 1:1425137/1‑71 (MQ=255) gATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTa < 1:1812644/36‑1 (MQ=255) gATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTa < 1:758817/36‑1 (MQ=255) gATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACTGTAATGTCATCATCCCGTCCGATGTTCCGCTc > 1:3878947/1‑71 (MQ=255) gATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCg < 1:1309590/56‑1 (MQ=255) gATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGt < 1:2610774/57‑1 (MQ=255) aTAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtc > 1:1805740/1‑46 (MQ=255) tAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtcatca > 1:551115/1‑49 (MQ=255) tAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGtcatc < 1:4075349/48‑1 (MQ=255) tAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTcgc < 1:3736780/71‑1 (MQ=255) tAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTcgc > 1:72039/1‑71 (MQ=255) aagcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTcgcg > 1:1056407/1‑71 (MQ=255) agcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATg < 1:5182803/41‑1 (MQ=255) agcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCt > 1:93095/1‑66 (MQ=255) agcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTcgcg < 1:129852/70‑1 (MQ=255) agcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTCgcgc < 1:592819/71‑1 (MQ=255) gcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCgg < 1:3754738/56‑1 (MQ=255) gcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCgg < 1:3373374/56‑1 (MQ=255) gcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCgg < 1:2467415/56‑1 (MQ=255) gcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCgg < 1:1733476/56‑1 (MQ=255) gcgaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCgg < 1:960122/56‑1 (MQ=255) gaagcgCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTCGCgctgg > 1:1851128/1‑71 (MQ=255) | TCTTAATCAGTGTAATGTCGGATGCGTTTCGCTTATCTGACCTGGCATCGCGTGTAGGCCGGATAAGCGAAGCGCATCCGGCACAGTTCAGGAATTAACCGTAATGTCATCATCCCGTCCGGTGTTCCGCTCGCGCTGG > Exported/2636175‑2636313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |