| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,891,414 | C→A | 83.3% | P23P (CCC→CCA) | ytfQ → | predicted sugar transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,891,414 | 0 | C | A | 83.3% | 134.5 / 29.2 | 72 | P23P (CCC→CCA) | ytfQ | predicted sugar transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (3/9); new base A (35/25); total (38/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.56e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01 | |||||||||||
GTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGA > Exported/2891348‑2891481 | gtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTaa > 1:3160357/1‑71 (MQ=255) aaaCGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGt < 1:2771445/71‑1 (MQ=255) aaCGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGtt < 1:2156869/71‑1 (MQ=255) cGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTg > 1:793573/1‑70 (MQ=255) gCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGa > 1:477223/1‑71 (MQ=255) gCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGa > 1:1644834/1‑71 (MQ=255) acttaTAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGTTGGAttt < 1:499771/70‑1 (MQ=255) acttaTAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGAttt > 1:3172682/1‑70 (MQ=255) tataGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTc > 1:1988448/1‑69 (MQ=255) tataGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCg > 1:856054/1‑70 (MQ=255) tataGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCg > 1:4192863/1‑70 (MQ=255) tataGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCg > 1:4080021/1‑70 (MQ=255) gTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGAt > 1:2968793/1‑61 (MQ=255) gTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGt < 1:318984/71‑1 (MQ=255) tctcTGCAGTCTCGGCAGCCATGTCGTCTTTGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAgg < 1:5673827/69‑1 (MQ=255) tctcTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCg < 1:184488/54‑1 (MQ=255) tctcTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCg < 1:3869589/54‑1 (MQ=255) tctcTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAgg < 1:3371476/69‑1 (MQ=255) tctcTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAgg < 1:1667076/69‑1 (MQ=255) ctctGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcg > 1:3043732/1‑71 (MQ=255) tctGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcg > 1:3711553/1‑70 (MQ=255) tGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGTTGGAtttt > 1:1527808/1‑59 (MQ=255) tGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGTTGGAtttt > 1:2525782/1‑59 (MQ=255) tGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGTTGGAtt < 1:5429644/57‑1 (MQ=255) cAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcggat < 1:1386304/69‑1 (MQ=255) tcGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTgg > 1:399904/1‑47 (MQ=255) tcGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTgg > 1:2915460/1‑47 (MQ=255) tcGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTgg > 1:5580854/1‑47 (MQ=255) tcGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTg > 1:2240297/1‑46 (MQ=255) tcGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGa > 1:1125283/1‑48 (MQ=255) cGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGTTGGATTTTCGCAGGt < 1:3673012/58‑1 (MQ=255) ggCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCa < 1:3736948/70‑1 (MQ=255) gCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGc > 1:5578602/1‑52 (MQ=255) gCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAgg < 1:4750902/71‑1 (MQ=255) aGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAg > 1:561895/1‑52 (MQ=255) aGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAg > 1:1052720/1‑52 (MQ=255) tGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGAtt < 1:5673746/40‑1 (MQ=255) tGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGAtt < 1:5360310/40‑1 (MQ=255) tGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGAtt < 1:1094312/40‑1 (MQ=255) gtcgtcTATGGCGTTGGCCGCTCCCTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATc < 1:606165/60‑1 (MQ=255) gtcgtcTATGGCGTTGGCCGCTCCCTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATc < 1:4242425/60‑1 (MQ=255) tcgtcTATGGCGTTGGCCGCTCCCTTAACCGTTGGATTTTCGCAg > 1:1013643/1‑45 (MQ=255) tcgtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGc > 1:1054248/1‑71 (MQ=255) tcgtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGc > 1:5503427/1‑71 (MQ=255) tcgtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCAGGCGTGc > 1:3999523/1‑71 (MQ=255) tcgtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTAGCAGGTCGGATCGGAATCAGGCTGGCGTGc > 1:4359971/1‑71 (MQ=255) gtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGcc < 1:195057/70‑1 (MQ=255) gtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGcc < 1:623359/70‑1 (MQ=255) gtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGcc < 1:3563001/70‑1 (MQ=255) gtcTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCg < 1:4976571/71‑1 (MQ=255) cTATGGCGTTGGCCGCTCCATTAACCGTTGGAtttt < 1:2868340/36‑1 (MQ=255) tGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCTGAATCAGGCTGGCGTGCCGCa < 1:2404115/68‑1 (MQ=255) tGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCa < 1:1158279/68‑1 (MQ=255) tGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa > 1:4566704/1‑70 (MQ=255) tGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa < 1:254359/70‑1 (MQ=255) tGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa < 1:4288357/70‑1 (MQ=255) tGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa < 1:3900937/70‑1 (MQ=255) ggCGTTGGCCGCTCCCTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa < 1:3805718/69‑1 (MQ=255) ggCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCa > 1:115211/1‑36 (MQ=255) ggCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGc > 1:3144295/1‑63 (MQ=255) ggCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGc > 1:4882948/1‑63 (MQ=255) gCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAAt > 1:664518/1‑49 (MQ=255) gCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAAt > 1:5448093/1‑49 (MQ=255) gCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGaaa < 1:300072/70‑1 (MQ=255) ttGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAAt < 1:2084694/46‑1 (MQ=255) ggCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGaa > 1:1389528/1‑64 (MQ=255) ggCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAAtg > 1:2040143/1‑71 (MQ=255) ggCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAAtg > 1:2671392/1‑71 (MQ=255) ggCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAAtg > 1:135331/1‑71 (MQ=255) cGCTCCCTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa < 1:2175515/60‑1 (MQ=255) gCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa > 1:3592812/1‑59 (MQ=255) cTCCCTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCg < 1:5172715/71‑1 (MQ=255) cccTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGa > 1:2678997/1‑70 (MQ=255) cccTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGa > 1:251989/1‑70 (MQ=255) cccTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGa > 1:2543319/1‑70 (MQ=255) | GTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCCTTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGA > Exported/2891348‑2891481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |