| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,911,785 | C→A | 12.4% | intergenic (+80/+126) | mgtA → / ← yjgF | magnesium transporter/ketoacid‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,911,785 | 0 | C | A | 12.4% | 209.5 / 11.7 | 72 | intergenic (+80/+126) | mgtA/yjgF | magnesium transporter/ketoacid‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (30/33); new base A (4/5); total (34/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.25e-01 | |||||||||||
GGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAT > Exported/2911717‑2911855 | ggCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCtt < 1:2150770/71‑1 (MQ=255) aCGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATc < 1:1393271/71‑1 (MQ=255) gATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATcc > 1:5592202/1‑70 (MQ=255) gATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATcc < 1:5329835/70‑1 (MQ=255) gATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATc < 1:1027106/69‑1 (MQ=255) gATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCg > 1:2046015/1‑71 (MQ=255) aTAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCgg > 1:2608133/1‑71 (MQ=255) tAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGc > 1:5080350/1‑71 (MQ=255) cttatcgtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATccggat > 1:1035075‑M2/49‑68 (MQ=255) cttatcgtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATccggat > 1:2375641‑M2/49‑68 (MQ=255) cttatcgtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATccggat > 1:5580942‑M2/49‑68 (MQ=255) ccGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCcaaca < 1:3010212/71‑1 (MQ=255) ccGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATACGGCGTAAATGCCTTATCCGGCcaac > 1:664712/1‑70 (MQ=255) tcgtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATCCGGAtaacaa < 1:548195‑M2/27‑1 (MQ=255) tcgtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATCCGGAtaacaa < 1:1471091‑M2/27‑1 (MQ=255) tcgtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATCCGGAtaacaa < 1:591027‑M2/27‑1 (MQ=255) gATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACaaa < 1:3773129/71‑1 (MQ=255) gtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATCCgg < 1:2777510‑M2/20‑1 (MQ=255) gtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATCCGgataacaata > 1:179359‑M2/43‑69 (MQ=255) gtgccggaatacatcccatatttcggcacgctcaccggatgcGGCATCAGTGCATTATCCGgataacaata < 1:1359697‑M2/29‑3 (MQ=255) aTTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAAt > 1:1179855/1‑70 (MQ=255) gACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTg < 1:3545159/70‑1 (MQ=255) cAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAg > 1:1643894/1‑71 (MQ=255) gTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCgg > 1:1000726/1‑44 (MQ=255) gTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAAt < 1:4649130/71‑1 (MQ=255) gAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATcc > 1:1803372/1‑40 (MQ=255) aGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCCGCCAACAAATTCAATAAATTGCAGGAATCAc > 1:2271938/1‑71 (MQ=255) gTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGcc > 1:3416890/1‑42 (MQ=255) gTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCa > 1:2281783/1‑69 (MQ=255) ttGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAg > 1:812365/1‑71 (MQ=255) tCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCt > 1:3438460/1‑71 (MQ=255) cATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCt > 1:3526411/1‑70 (MQ=255) cATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCt < 1:4446270/70‑1 (MQ=255) aTGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGa < 1:5099439/71‑1 (MQ=255) aTGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGa < 1:2773408/71‑1 (MQ=255) ggatgcGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGc < 1:3166951‑M2/41‑1 (MQ=255) ggatgcGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGc < 1:2635218‑M2/41‑1 (MQ=255) tgcGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCg > 1:5076195‑M2/4‑69 (MQ=255) tgcGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTa < 1:1182871‑M2/68‑1 (MQ=255) tgcGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTa < 1:1901803‑M2/68‑1 (MQ=255) tgcGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTa < 1:4959696‑M2/68‑1 (MQ=255) cGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGc < 1:5184338‑M2/70‑1 (MQ=255) ggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAAt < 1:4642394/47‑1 (MQ=255) ggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcg < 1:4256496/71‑1 (MQ=255) ggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcg < 1:4635045/71‑1 (MQ=255) ggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcg < 1:4971433/71‑1 (MQ=255) ggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcg < 1:3069909/71‑1 (MQ=255) gcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTa > 1:1219835/1‑52 (MQ=255) gcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTa > 1:5058795/1‑52 (MQ=255) gcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcgc < 1:2051417/71‑1 (MQ=255) gcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAgcgc < 1:3327339/71‑1 (MQ=255) cgTAAATGCCTTATCCTGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa < 1:1377405/71‑1 (MQ=255) cgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa < 1:3934798/71‑1 (MQ=255) cgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa > 1:3306600/1‑71 (MQ=255) cgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa < 1:4497950/71‑1 (MQ=255) tAAATGCCTTATCCGGCCAATAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATc < 1:3104206/71‑1 (MQ=255) tAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATc < 1:1343368/71‑1 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAg > 1:3781377/1‑48 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCg > 1:5577476/1‑60 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCg > 1:5483771/1‑60 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCa > 1:4581059/1‑67 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCAt > 1:1544242/1‑68 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCa < 1:4790980/70‑1 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCa < 1:3865948/70‑1 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCa < 1:4840835/70‑1 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:5323613/1‑71 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:2146472/1‑71 (MQ=255) tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGaa > 1:5377857/1‑38 (MQ=255) tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGaa > 1:434458/1‑38 (MQ=255) tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGaa > 1:3930220/1‑38 (MQ=255) tGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGc < 1:4230306/71‑1 (MQ=255) gCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACg > 1:80636/1‑42 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCg < 1:4190975/70‑1 (MQ=255) cTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCg < 1:3237394/69‑1 (MQ=255) cTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAt < 1:2466022/71‑1 (MQ=255) | GGCACGATAGCCCCGATTCAGATTGTAGACAAAGTGAGTTTTGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAT > Exported/2911717‑2911855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |