| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,919,775 | T→C | 9.8% | intergenic (‑80/‑82) | argI ← / → yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,919,775 | 0 | T | C | 9.8% | 356.3 / 21.8 | 132 | intergenic (‑80/‑82) | argI/yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (75/44); new base C (7/6); total (82/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
GTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAT > Exported/2919707‑2919841 | gtgGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATa > 1:3742826/1‑70 (MQ=255) tgGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATaaa > 1:1274731/1‑71 (MQ=255) gCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATaa > 1:3774842/1‑68 (MQ=255) gCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc > 1:4369160/1‑71 (MQ=255) cTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATGAATCt < 1:4456394/71‑1 (MQ=255) gCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTc < 1:3988443/71‑1 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc > 1:4190779/1‑60 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc > 1:2637125/1‑60 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca > 1:3737516/1‑69 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca > 1:2115807/1‑69 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaaa < 1:725143/71‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc < 1:4783280/58‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc < 1:622186/58‑1 (MQ=255) gAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGt > 1:2808177/1‑71 (MQ=255) aaTTAATATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg > 1:572657/1‑71 (MQ=255) aaTTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:2476002/71‑1 (MQ=255) aTTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:552584/70‑1 (MQ=255) tAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAg > 1:4909873/1‑71 (MQ=255) aaaaTTCACTTTATATGTGTAATTATTCATTTGCACCCCCATTTCACAATTCTTTCTTACAAAGGTGGAgg > 1:4112108/1‑71 (MQ=255) aaaaTTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAgg > 1:5335653/1‑71 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAAt > 1:518330/1‑50 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa > 1:3431875/1‑61 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:4741111/71‑1 (MQ=255) aaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:1688589/70‑1 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:346257/1‑70 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:3072625/1‑70 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAAt > 1:5313446/1‑71 (MQ=255) tCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:5297771/1‑69 (MQ=255) cactttATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGa > 1:4876526/4‑63 (MQ=255) aaTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTc < 1:2953688/71‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGt < 1:4381462/49‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:496189/71‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:667106/71‑1 (MQ=255) tttATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc > 1:4966007/1‑63 (MQ=255) tataTGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtg > 1:1443233/1‑71 (MQ=255) atatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCt < 1:2773216/41‑1 (MQ=255) tatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggt < 1:5645027/71‑1 (MQ=255) tatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggt < 1:4119257/71‑1 (MQ=255) tGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTc > 1:5444318/1‑43 (MQ=255) tGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggtg < 1:1991408/70‑1 (MQ=255) gatgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:1215417/1‑48 (MQ=255) gatgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:2127078/1‑48 (MQ=255) atgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAg > 1:1835171/1‑52 (MQ=255) atgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt > 1:525556/1‑70 (MQ=255) gatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:1964015/1‑45 (MQ=255) attattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc > 1:2177611/1‑70 (MQ=255) attattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTCGTGTGTGAc > 1:416787/1‑70 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:3582467/1‑47 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:5287353/1‑47 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:4554212/1‑47 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:1363484/40‑1 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:1044524/40‑1 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1820770/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1234272/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:2205611/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:2698251/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACaa > 1:1562826/1‑71 (MQ=255) ttattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:3937787/45‑1 (MQ=255) tattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:3648732/39‑1 (MQ=255) ttCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:2149397/1‑69 (MQ=255) ttCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATaa < 1:3577876/71‑1 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:5002463/1‑68 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:1000203/1‑68 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:3866388/1‑68 (MQ=255) tttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:1173437/50‑1 (MQ=255) ttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg > 1:3220703/1‑37 (MQ=255) ttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgt > 1:422535/1‑56 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgt > 1:3778628/1‑50 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTa < 1:518456/70‑1 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTAt > 1:5344715/1‑71 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTAt > 1:2416517/1‑71 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAAAAGAGTAt > 1:4699726/1‑71 (MQ=255) gCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:2487863/35‑1 (MQ=255) cAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa < 1:2657415/57‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt < 1:3225505/54‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCgg < 1:2293791/71‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCgg > 1:3692972/1‑71 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:1558451/36‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAg < 1:3053669/44‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc < 1:1005353/55‑1 (MQ=255) tCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAg < 1:4546108/71‑1 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:4820641/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:4540978/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1160747/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1570164/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:3528147/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:2877922/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:3378416/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:5110028/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:299969/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:5600443/1‑71 (MQ=255) aaGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa < 1:4001974/69‑1 (MQ=255) aaGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa < 1:3125529/69‑1 (MQ=255) aaGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACa > 1:5501872/1‑71 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCa > 1:3494638/1‑65 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAt < 1:4154781/71‑1 (MQ=255) gCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAt > 1:5585584/1‑70 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgt < 1:843297/35‑1 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt < 1:1136269/48‑1 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:4209560/1‑53 (MQ=255) | GTGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAT > Exported/2919707‑2919841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |