| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,919,778 | A→T | 9.7% | intergenic (‑83/‑79) | argI ← / → yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,919,778 | 0 | A | T | 9.7% | 365.9 / 24.4 | 133 | intergenic (‑83/‑79) | argI/yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (73/47); new base T (7/6); total (80/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 153 total aligned reads displayed.
TGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAGG > Exported/2919708‑2919848 | tgGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATaaa > 1:1274731/1‑71 (MQ=255) gCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc > 1:4369160/1‑71 (MQ=255) gCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTc < 1:3988443/71‑1 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc > 1:2637125/1‑60 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca > 1:2115807/1‑69 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca > 1:3737516/1‑69 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaaa < 1:725143/71‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc < 1:4783280/58‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATc < 1:622186/58‑1 (MQ=255) gAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGt > 1:2808177/1‑71 (MQ=255) aaTTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:2476002/71‑1 (MQ=255) aaTTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:1210193/71‑1 (MQ=255) aTTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg < 1:1938506/71‑1 (MQ=255) ttAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCt < 1:3286011/55‑1 (MQ=255) tAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAg > 1:4909873/1‑71 (MQ=255) aaaaTTCACTTTATATGTGTAATTATTCATTTGCACCCCCATTTCACAATTCTTTCTTACAAAGGTGGAgg > 1:4112108/1‑71 (MQ=255) aaaaTTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAgg > 1:5335653/1‑71 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAAt > 1:518330/1‑50 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa > 1:3431875/1‑61 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:4741111/71‑1 (MQ=255) tttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaaa < 1:5648880/59‑1 (MQ=255) aTTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAGGCaa < 1:2416299/71‑1 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:346257/1‑70 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:3072625/1‑70 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAAt > 1:5313446/1‑71 (MQ=255) tCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:4259186/1‑60 (MQ=255) tCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:5297771/1‑69 (MQ=255) cactttATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGa > 1:4876526/4‑63 (MQ=255) cAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:5261381/1‑59 (MQ=255) aaTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTc < 1:2953688/71‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:496189/71‑1 (MQ=255) tttATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:1656882/58‑1 (MQ=255) tttATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc > 1:4966007/1‑63 (MQ=255) tataTGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAGGCaaa > 1:2163919/1‑63 (MQ=255) tataTGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtg > 1:1443233/1‑71 (MQ=255) atatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCt < 1:2773216/41‑1 (MQ=255) atatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtgg > 1:3991974/1‑71 (MQ=255) tatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggt < 1:5645027/71‑1 (MQ=255) tatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggt < 1:4119257/71‑1 (MQ=255) tGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggtg < 1:1991408/70‑1 (MQ=255) gatgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:2127078/1‑48 (MQ=255) gatgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt > 1:3009926/1‑71 (MQ=255) gatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:3771574/1‑45 (MQ=255) attattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc > 1:2177611/1‑70 (MQ=255) attattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTCGTGTGTGAc > 1:416787/1‑70 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:3582467/1‑47 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:4554212/1‑47 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:1363484/40‑1 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:2698251/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1234272/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1820770/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:5496535/1‑52 (MQ=255) ttCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATaa < 1:3577876/71‑1 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtg > 1:3078145/1‑56 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:3866388/1‑68 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:1000203/1‑68 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:5002463/1‑68 (MQ=255) aTTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:3890303/1‑71 (MQ=255) aTTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:851574/1‑71 (MQ=255) ttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg > 1:3220703/1‑37 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTa < 1:518456/70‑1 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTAt > 1:5344715/1‑71 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAAAAGAGTAt > 1:4699726/1‑71 (MQ=255) gCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:2487863/35‑1 (MQ=255) cAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa < 1:2657415/57‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCgg < 1:2293791/71‑1 (MQ=255) aGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGc < 1:5530268/71‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:4891607/36‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:1558451/36‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc < 1:1005353/55‑1 (MQ=255) tCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAg < 1:4546108/71‑1 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1160747/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1570164/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:2877922/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:3378416/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:3528147/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:3682534/1‑71 (MQ=255) aaGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGAc < 1:4459273/70‑1 (MQ=255) aaGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACa > 1:5501872/1‑71 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCa > 1:3494638/1‑65 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAt < 1:4154781/71‑1 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAt < 1:1517455/71‑1 (MQ=255) gCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAt > 1:5585584/1‑70 (MQ=255) cATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt > 1:718358/1‑44 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt < 1:1136269/48‑1 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:4202811/1‑53 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:4209560/1‑53 (MQ=255) aaaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa < 1:4790631/43‑1 (MQ=255) aaaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGAAGGACATTaa < 1:3168621/69‑1 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAgtggtg > 1:4848204/1‑37 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTaa > 1:4421185/1‑68 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTaa > 1:615444/1‑68 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag < 1:1123610/71‑1 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag < 1:4443757/71‑1 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAaga < 1:1972154/70‑1 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc > 1:5053565/1‑42 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag > 1:3029495/1‑70 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag > 1:1193032/1‑70 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAgg < 1:1880655/71‑1 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAgg < 1:1066473/71‑1 (MQ=255) | TGGCTAACGCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAGG > Exported/2919708‑2919848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |