| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,919,784 | G→C | 8.3% | intergenic (‑89/‑73) | argI ← / → yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,919,784 | 0 | G | C | 8.3% | 461.5 / 22.5 | 157 | intergenic (‑89/‑73) | argI/yjgD | ornithine carbamoyltransferase 1/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (86/58); new base C (7/6); total (93/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01 | |||||||||||
Only 100 of 158 total aligned reads displayed.
GCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAGGAAT > Exported/2919716‑2919851 | gCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTc < 1:3988443/71‑1 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca > 1:2115807/1‑69 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca > 1:3737516/1‑69 (MQ=255) aaTGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaaa < 1:725143/71‑1 (MQ=255) tGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTcaca < 1:4754993/67‑1 (MQ=255) gAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGt > 1:2808177/1‑71 (MQ=255) aTTAAAATTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:552584/70‑1 (MQ=255) tAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAg > 1:4909873/1‑71 (MQ=255) aaaaTTCACTTTATATGTGTAATTATTCATTTGCACCCCCATTTCACAATTCTTTCTTACAAAGGTGGAgg > 1:4112108/1‑71 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa > 1:3431875/1‑61 (MQ=255) aaaTTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:4741111/71‑1 (MQ=255) tttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaaa < 1:5648880/59‑1 (MQ=255) aTTCACTTTATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAGGCaa < 1:2416299/71‑1 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:346257/1‑70 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:3072625/1‑70 (MQ=255) ttCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAAt > 1:5313446/1‑71 (MQ=255) tCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:4259186/1‑60 (MQ=255) tCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:5297771/1‑69 (MQ=255) cactttATATGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGa > 1:4876526/4‑63 (MQ=255) cAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:5261381/1‑59 (MQ=255) aaTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTc < 1:2953688/71‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGt < 1:4381462/49‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:496189/71‑1 (MQ=255) aTTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCa < 1:667106/71‑1 (MQ=255) tttATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:1656882/58‑1 (MQ=255) tttATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc > 1:4966007/1‑63 (MQ=255) tataTGTGTAATTATTCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTGGAGGCaaa > 1:2163919/1‑63 (MQ=255) atatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtgg > 1:3991974/1‑71 (MQ=255) tatGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtggt < 1:4119257/71‑1 (MQ=255) gatgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:1215417/1‑48 (MQ=255) atgatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt > 1:525556/1‑70 (MQ=255) gatTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAgg > 1:1964015/1‑45 (MQ=255) attattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTCGTGTGTGAc > 1:416787/1‑70 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:4554212/1‑47 (MQ=255) attattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTgg > 1:3582467/1‑47 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:1363484/40‑1 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:2205611/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1820770/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:2698251/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:1234272/1‑52 (MQ=255) ttattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCaa > 1:5496535/1‑52 (MQ=255) ttattCATTTGCAACCCCATTTCACAATTCTTTCTTACAAAGGTg < 1:3561749/45‑1 (MQ=255) tattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACaa < 1:3648732/39‑1 (MQ=255) tattCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:2569352/49‑1 (MQ=255) ttCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:2149397/1‑69 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgtg > 1:3078145/1‑56 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:5002463/1‑68 (MQ=255) tCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt > 1:1000203/1‑68 (MQ=255) aTTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:3890303/1‑71 (MQ=255) aTTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:851574/1‑71 (MQ=255) ttGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg > 1:3220703/1‑37 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgt > 1:3778628/1‑50 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTAt > 1:5344715/1‑71 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTAt > 1:2416517/1‑71 (MQ=255) tGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAAAAGAGTAt > 1:4699726/1‑71 (MQ=255) gCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTg < 1:2487863/35‑1 (MQ=255) cAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa < 1:2657415/57‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGgtgtgt < 1:3225505/54‑1 (MQ=255) aaGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCgg > 1:3692972/1‑71 (MQ=255) aGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGc < 1:5530268/71‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:1558451/36‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGc < 1:4891607/36‑1 (MQ=255) gTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc < 1:1005353/55‑1 (MQ=255) cTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAg > 1:2026998/1‑70 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:4540978/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:299969/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:5600443/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1160747/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:4820641/1‑71 (MQ=255) tAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGa > 1:1570164/1‑71 (MQ=255) aaGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGAc < 1:4459273/70‑1 (MQ=255) aaGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACa > 1:5501872/1‑71 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCa > 1:3494638/1‑65 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAt < 1:4154781/71‑1 (MQ=255) aGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACAt < 1:1517455/71‑1 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAgt < 1:2837860/35‑1 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAAt < 1:1136269/48‑1 (MQ=255) tAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:4209560/1‑53 (MQ=255) aaaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa < 1:4790631/43‑1 (MQ=255) aaaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTaa > 1:3393215/1‑69 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTaa > 1:615444/1‑68 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag < 1:4443757/71‑1 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag < 1:1123610/71‑1 (MQ=255) aaTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAaga < 1:1972154/70‑1 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGAc > 1:5053565/1‑42 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag > 1:1193032/1‑70 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAagag > 1:3029495/1‑70 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAgg < 1:1066473/71‑1 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAgg < 1:1490840/71‑1 (MQ=255) aTCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAgg < 1:1880655/71‑1 (MQ=255) cTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa > 1:3165966/1‑39 (MQ=255) cTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa > 1:1345603/1‑39 (MQ=255) cTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGa > 1:5594556/1‑39 (MQ=255) cTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACa > 1:351258/1‑41 (MQ=255) cTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGc < 1:2594342/55‑1 (MQ=255) cTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAGGaa > 1:1812894/1‑71 (MQ=255) tGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAagag > 1:730605/1‑45 (MQ=255) tGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTa > 1:3804617/1‑47 (MQ=255) tGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTa > 1:3155701/1‑47 (MQ=255) tGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTaa < 1:5169190/62‑1 (MQ=255) | GCCTCAATGAATTAAAATTCAATTTATATGGATGATTATTCATTTGCAAGTCTAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAGGAAT > Exported/2919716‑2919851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |