| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 337,128 | G→T | 29.4% | intergenic (+100/+216) | ybaQ → / ← copA | predicted DNA‑binding transcriptional regulator/copper transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 337,128 | 0 | G | T | 29.4% | 144.2 / 39.8 | 68 | intergenic (+100/+216) | ybaQ/copA | predicted DNA‑binding transcriptional regulator/copper transporter |
| Reads supporting (aligned to +/- strand): ref base G (26/22); new base T (4/16); total (30/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.50e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
GGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAT > Exported/337058‑337187 | ggATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAg < 1:617656/71‑1 (MQ=39)ggATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAg > 1:5361954/1‑71 (MQ=39)ggATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAg < 1:255182/71‑1 (MQ=39) gATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAgg < 1:2850960/71‑1 (MQ=39) aTAAGGCGTTCACGCCGCATCCGGCATCCGCGCCCCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGc > 1:4705287/1‑71 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGcc > 1:5426725/1‑71 (MQ=39) tAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGcc > 1:5234925/1‑71 (MQ=39) ggCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTa < 1:579626/70‑1 (MQ=40) ggCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTa < 1:3936434/70‑1 (MQ=40) cGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACTCGTCTTATCAGGCCTACa > 1:222679/1‑70 (MQ=25) ttCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAAc < 1:268372/71‑1 (MQ=39) tCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACt > 1:4098414/1‑71 (MQ=39) tCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACt > 1:4206352/1‑71 (MQ=39) cACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACtt > 1:3328428/1‑71 (MQ=39) ccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGc > 1:201713/1‑71 (MQ=39) gcatccggcatccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCt > 1:5332384/1‑71 (MQ=39) catccggcatccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTg < 1:5002858/71‑1 (MQ=39) tccggcatccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACaa < 1:4128991/58‑1 (MQ=35) tccggcatccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGaa < 1:4903546/71‑1 (MQ=39) ccggcatccgAGCTCCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACtt < 1:4656307/61‑1 (MQ=255) cggcatccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAAcc > 1:1167226/1‑71 (MQ=39) cggcatccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAAcc > 1:1160387/1‑71 (MQ=39) catccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTa < 1:4643591/71‑1 (MQ=39) tccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGcc < 1:3464144/46‑1 (MQ=38) tccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACt < 1:2581297/54‑1 (MQ=38) tccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAgg < 1:4124728/71‑1 (MQ=39) cgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGcc > 1:3645992/1‑71 (MQ=39) gCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGa > 1:2203401/1‑71 (MQ=255) gCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGa > 1:2769352/1‑71 (MQ=255) cACCGTTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:841036/71‑1 (MQ=255) cACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:4611801/71‑1 (MQ=255) cACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:3458981/71‑1 (MQ=255) aTTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:1673968/67‑1 (MQ=255) aTTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAgg > 1:3156300/1‑71 (MQ=255) ttGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTtgtg > 1:2478334/1‑47 (MQ=255) ttGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTg > 1:2808927/1‑51 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCt > 1:3006852/1‑48 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATaa > 1:1919618/1‑66 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAg > 1:3132075/1‑67 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAg > 1:5474537/1‑67 (MQ=255) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCg < 1:1366499/70‑1 (MQ=40) gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGt > 1:1283872/1‑71 (MQ=39) tGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTtgc < 1:1898891/41‑2 (MQ=255) tGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTa > 1:2726734/1‑53 (MQ=255) tGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTa > 1:5067364/1‑53 (MQ=255) aTGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt < 1:31433/59‑1 (MQ=255) cGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccg < 1:2408332/71‑1 (MQ=39) cGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcat < 1:1080292/71‑1 (MQ=39) cTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc > 1:4314238/1‑71 (MQ=39) cTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatcc < 1:277113/71‑1 (MQ=39) gcgcGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:709523/67‑1 (MQ=11) aCCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccgg > 1:2097000/1‑70 (MQ=40) gcGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAg < 1:3841883/38‑1 (MQ=11) gTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAgga > 1:2300586/1‑38 (MQ=14) tCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccggcag < 1:5343446/68‑2 (MQ=11) tCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGttt < 1:2583956/52‑1 (MQ=11) tCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca < 1:4141989/60‑1 (MQ=35) cTTATCATGCCTACAAACTTGTGCCTGAACGGTAg < 1:2725590/35‑1 (MQ=14) cTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCg > 1:1829399/1‑48 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCg < 1:3592969/47‑1 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:4532308/63‑1 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:3746486/63‑1 (MQ=11) ttATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgcatccgg < 1:712778/63‑1 (MQ=11) tATCATGCCTACAAACTTGTGCCTGAACGGTAgga > 1:2986557/1‑34 (MQ=14) tATCATGCCTACAAACTTGTGCCTGAACGGTAgga > 1:3834808/1‑34 (MQ=14) tATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGAt < 1:2194573/40‑1 (MQ=14) aTCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAgg < 1:1529795/43‑1 (MQ=14) aTCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAgg < 1:3865459/43‑1 (MQ=14) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGtt < 1:2434942/46‑1 (MQ=11) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGtt < 1:2441412/46‑1 (MQ=11) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGtt < 1:3298669/46‑1 (MQ=11) tCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCgca < 1:2503124/55‑1 (MQ=11) | GGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAT > Exported/337058‑337187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |