| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 385,057 | C→T | 9.7% | F89F (TTC→TTT) | cstA → | carbon starvation protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 385,057 | 0 | C | T | 9.7% | 225.5 / 11.4 | 82 | F89F (TTC→TTT) | cstA | carbon starvation protein |
| Reads supporting (aligned to +/- strand): ref base C (25/49); new base T (3/5); total (28/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
GCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC > Exported/384988‑385126 | gcgTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCg < 1:4248013/71‑1 (MQ=255)gcgTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCg < 1:3563430/71‑1 (MQ=255) cgTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCg < 1:1807338/70‑1 (MQ=255) gTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGt < 1:2043370/71‑1 (MQ=255) tGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAc > 1:575409/1‑71 (MQ=255) tGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAc > 1:4054576/1‑71 (MQ=255) gCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAtt < 1:506824/71‑1 (MQ=255) gCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGc < 1:1271483/71‑1 (MQ=255) ctGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGc < 1:565044/70‑1 (MQ=255) cgcCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAcc > 1:4132910/1‑58 (MQ=255) cgcCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCa < 1:2759067/70‑1 (MQ=255) cgcCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCAt > 1:4927011/1‑71 (MQ=255) gcCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCAtt < 1:2971558/71‑1 (MQ=255) ccATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGt > 1:5505467/1‑52 (MQ=255) ccATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGc < 1:3791880/66‑1 (MQ=255) ccATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGc < 1:4333570/66‑1 (MQ=255) cATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGc < 1:525246/71‑1 (MQ=255) cATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGc < 1:3267131/71‑1 (MQ=255) cATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGc < 1:1894336/71‑1 (MQ=255) cATAACGACGGGCTGGACTATGTGCCGAAGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGc < 1:4955664/71‑1 (MQ=255) aTAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGcc < 1:1730019/71‑1 (MQ=255) tAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCAtt < 1:967651/67‑1 (MQ=255) tAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCAtt < 1:5657472/67‑1 (MQ=255) tAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCAtt < 1:5153350/67‑1 (MQ=255) tAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCAtt < 1:5663818/67‑1 (MQ=255) tAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCg < 1:2051506/71‑1 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCg > 1:5500027/1‑45 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAtt > 1:2071143/1‑54 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAtt > 1:1304091/1‑54 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCa > 1:4797923/1‑63 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCggc > 1:1702531/1‑70 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCgg < 1:781360/70‑1 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCgg < 1:1060206/70‑1 (MQ=255) acgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATATTGCGGCCATTGCCg > 1:370272/1‑69 (MQ=255) cgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAg > 1:3004488/1‑71 (MQ=255) cgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAg < 1:1969869/71‑1 (MQ=255) cgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAg < 1:2937430/71‑1 (MQ=255) cgacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAg < 1:2894153/71‑1 (MQ=255) cgacgGACTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAg > 1:739857/1‑71 (MQ=255) gacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAtttt > 1:5138426/1‑54 (MQ=255) gacgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGc < 1:2977286/71‑1 (MQ=255) acgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCa > 1:2245817/1‑60 (MQ=255) acgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAg < 1:1323330/69‑1 (MQ=255) cgGGCTGGACTATGTGCCGACGGACAGGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAg < 1:744356/71‑1 (MQ=255) cgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAg < 1:5272378/71‑1 (MQ=255) cgGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAg < 1:5164516/71‑1 (MQ=255) gggCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAgg < 1:19354/71‑1 (MQ=255) gggCTGGACTATGTGCAGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAgg < 1:2840582/71‑1 (MQ=255) cTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTcc < 1:3776807/71‑1 (MQ=255) tGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAt > 1:1040396/1‑44 (MQ=255) aCTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGa < 1:3179177/59‑1 (MQ=255) aCTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCtg < 1:3968233/71‑1 (MQ=255) tATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCtggt > 1:1513531/1‑71 (MQ=255) tgtgCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTg > 1:3319642/1‑41 (MQ=255) tgtgCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCtggtg < 1:2850864/70‑1 (MQ=255) tgCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGcc < 1:1883475/44‑1 (MQ=255) tgCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGcc < 1:2117544/44‑1 (MQ=255) tgCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGcc < 1:3224693/44‑1 (MQ=255) ccGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGcc > 1:489017/1‑71 (MQ=255) cGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCg > 1:4572003/1‑71 (MQ=255) gACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCgg < 1:1661392/71‑1 (MQ=255) gACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCgg < 1:554019/71‑1 (MQ=255) aCGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCa > 1:5182327/1‑40 (MQ=255) ctgACAAGAAAGTGCTGTTCGGGCACCATTTTGCGGCCATTGCCGGAGCAGGGCCGCTGGTGGGGcc < 1:3712220/65‑1 (MQ=255) ggACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCtg > 1:2584290/1‑58 (MQ=255) ggACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTAc > 1:1046367/1‑71 (MQ=255) cAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTgg < 1:2712877/71‑1 (MQ=255) aaGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTggc > 1:3787673/1‑71 (MQ=255) gtgtTGTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCtggt < 1:2651637/50‑1 (MQ=255) gtgtTGTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCtggt < 1:1850922/50‑1 (MQ=255) gTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCa < 1:1296041/71‑1 (MQ=255) gTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCa < 1:1289279/71‑1 (MQ=255) tGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCg < 1:33002/44‑1 (MQ=255) tGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCg < 1:4700197/44‑1 (MQ=255) gttGTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCTGGTGGGTCCGGTTCTCgccgcg < 1:1649463/65‑1 (MQ=255) ttGTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCtggt > 1:2677279/2‑47 (MQ=255) ttGTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCtggt > 1:4289989/2‑47 (MQ=255) cTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAAt > 1:868934/1‑71 (MQ=255) tGTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCTGGTGGGTCCGGTTCTCGCCGCGCa > 1:3884430/1‑67 (MQ=255) tGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAAt < 1:5489501/70‑1 (MQ=255) gTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCTGGTGGGTCCGGTTCTCGCCGCGCAGATg < 1:5612341/70‑1 (MQ=255) gTTTGGTCACCACTTCGCCGCTATCGCCGGTGCTGGTCCGCTGGTGGGTCCGGTTCTCGCCGCGCAGATg < 1:5279289/70‑1 (MQ=255) cGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGc > 1:2273881/1‑70 (MQ=255) | GCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGC > Exported/384988‑385126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |