| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 412,492 | C→T | 75.9% | intergenic (‑137/+152) | leuS ← / ← lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 412,492 | 0 | C | T | 75.9% | 126.0 / 40.4 | 76 | intergenic (‑137/+152) | leuS/lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (6/12); new base T (26/31); total (33/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 | |||||||||||
TAGCATAGCCCAAACGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTA > Exported/412423‑412556 | tagcatagcCCAAACGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACt > 1:2326982/1‑71 (MQ=255) gcatagcCCAAACGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCa < 1:642432/71‑1 (MQ=255) atagcCCAAACGTCCGCGTCAAAACAGCCTTTCGAGCACTCGACGTTGAAATGATGCCCGGATTACTCATa < 1:4961584/71‑1 (MQ=255) ccAAACGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACAtt > 1:2206665/1‑70 (MQ=255) ccAAACGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACAt > 1:5336086/1‑69 (MQ=255) cAAACGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTaa < 1:2715636/71‑1 (MQ=255) aCGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAAtt > 1:4577263/1‑70 (MQ=255) cgTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTa > 1:844274/1‑65 (MQ=255) gTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGtt < 1:3676079/71‑1 (MQ=255) gTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGtt < 1:180503/71‑1 (MQ=255) tCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGtt < 1:4877106/70‑1 (MQ=255) cAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCAt < 1:3405710/51‑1 (MQ=255) cAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCAt < 1:5648191/51‑1 (MQ=255) cAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtg > 1:729654/1‑71 (MQ=255) aaaaCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtgt > 1:1503227/1‑71 (MQ=255) aaaaCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtgt > 1:1580744/1‑71 (MQ=255) aaaaCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtgt > 1:2987422/1‑71 (MQ=255) aaaaCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtgt > 1:1291069/1‑71 (MQ=255) aaaaCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtgt > 1:421930/1‑71 (MQ=255) aCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCa > 1:5335531/1‑46 (MQ=255) aCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTggg < 1:4852558/71‑1 (MQ=255) aCAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTggg < 1:3734854/71‑1 (MQ=255) aGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCg < 1:2530201/71‑1 (MQ=255) aGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCg < 1:2131257/71‑1 (MQ=255) ccTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTa > 1:344460/1‑71 (MQ=255) tttCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtg < 1:2806021/61‑1 (MQ=255) ttCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtg > 1:4885043/1‑60 (MQ=255) ttCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtg > 1:2843111/1‑60 (MQ=255) ttCGCGCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtg > 1:4846850/1‑60 (MQ=255) tCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTtgtg > 1:2144107/1‑61 (MQ=255) tCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTAtt < 1:3699574/69‑1 (MQ=255) cgcgCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTag > 1:2248100/1‑70 (MQ=255) cgcgCACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTag > 1:4062942/1‑70 (MQ=255) gcgcACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTATTagca < 1:5074996/71‑1 (MQ=255) gcACTCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTagcaaa < 1:1021645/71‑1 (MQ=255) tCGACGTTGAAATGATGCCCGGATTATTCATACATTaa < 1:1169618/38‑1 (MQ=255) tCGACGTTGAAATGATGCCCGGATTATTCATACATTaa < 1:2528874/38‑1 (MQ=255) tCGACGTTGAAATGATGCCCGGATTATTCATACATTaa < 1:1974760/38‑1 (MQ=255) tCGACGTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTtg < 1:4347337/51‑1 (MQ=255) cGACGTTGAAATGATGCCCGGATTAATCATACATTAATTTACAGAGttt > 1:2381045/1‑49 (MQ=255) gACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAg > 1:1897383/1‑70 (MQ=255) gTTGAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAAc < 1:4589915/71‑1 (MQ=255) gAAATGATGCCCGGATTATTCATACATTAATTTACaga > 1:2130704/1‑38 (MQ=255) gAAATGATGCCCGGATTATTCATACATTAATTTACaga > 1:4063028/1‑38 (MQ=255) gAAATGATGCCCGGATTATTCATACATTAATTTACaga > 1:400808/1‑38 (MQ=255) gAAATGATGCCCGGATTATTCATACATTAATTTACaga > 1:2137497/1‑38 (MQ=255) gAAATGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACa > 1:2324802/1‑69 (MQ=255) gAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACaa < 1:3279365/70‑1 (MQ=255) aaaTGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACa > 1:4306920/1‑68 (MQ=255) aaaTGATGCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAg < 1:5344258/71‑1 (MQ=255) aaTGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCg < 1:3095692/47‑1 (MQ=255) aaTGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCg < 1:3639654/47‑1 (MQ=255) atgatgCCCGGATTATTCATACATTAATTTACAGAGTTtg < 1:5513810/40‑1 (MQ=255) atgatgCCCGGATTATTCATACATTAATTTACAGAGTTtg < 1:4759444/40‑1 (MQ=255) atgatgCCCGGATTATTCATACATTAATTTACAGAGTTtg < 1:2216255/40‑1 (MQ=255) atgatgCCCGGATTATTCATACATTAATTTACAGAGTTtg < 1:4946332/40‑1 (MQ=255) atgatgCCCGGATTATTCATACATTAATTTACAGAGTTtg < 1:3924765/40‑1 (MQ=255) tgatgCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACa < 1:3646591/65‑1 (MQ=255) atgCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAg < 1:674435/66‑1 (MQ=255) atgCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAg < 1:3945511/66‑1 (MQ=255) atgCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAg < 1:3912742/66‑1 (MQ=255) atgCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAg < 1:3242045/66‑1 (MQ=255) atgCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGt > 1:3403161/1‑71 (MQ=255) atgCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGt > 1:3396656/1‑71 (MQ=255) tgCCCGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTc < 1:4616086/71‑1 (MQ=255) cGGATTATTCATACATTAATTTACAGAGTTTGTGGGc < 1:4478987/37‑1 (MQ=255) cGGATTATTCATACATTAATTTACAGAGTTTGTGGGc < 1:1155645/37‑1 (MQ=255) cGGATTATTCATACATTAATTTACAGAGTTTGTGGGc < 1:19588/37‑1 (MQ=255) cGGATTATTCATACATTAATTTACAGAGTTTGTGGGc < 1:398898/37‑1 (MQ=255) cGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGt < 1:3819559/39‑1 (MQ=255) cGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGt < 1:2277265/39‑1 (MQ=255) cGGATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCta > 1:4755249/1‑69 (MQ=255) ggATTATTCATACATTAATTTACAGAGTTTGTGGGCGTa > 1:2244866/1‑39 (MQ=255) ggATTATTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCtatta < 1:1120827/71‑1 (MQ=255) gATTATTCATACATTAATTTACAGAGTTTGTGGGCGTAt > 1:4611183/1‑39 (MQ=255) attattCATACATTAATTTACAGAGTTTGTGGGCGTATTagcaaagca > 1:3560382/1‑48 (MQ=255) attattCATACATTAATTTACAGAGTTTGTGGGCGTATTagcaaagca > 1:946447/1‑48 (MQ=255) attattCATACATTAATTTACAGAGTTTGTGGGCGTATTagcaaagc < 1:4651875/47‑1 (MQ=255) attattCATACATTAATTTACAGAGTTTGTGGGCGTATTagcaaagc < 1:213210/47‑1 (MQ=255) aCTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGaa > 1:154066/1‑57 (MQ=255) | TAGCATAGCCCAAACGTCCGCGTCAAAACAGCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGATTACTCATACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTA > Exported/412423‑412556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |