| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 558,978 | G→T | 12.8% | L75L (CTG→CTT) | cmr → | multidrug efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 558,978 | 0 | G | T | 12.8% | 112.8 / 4.0 | 39 | L75L (CTG→CTT) | cmr | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base G (15/19); new base T (2/3); total (17/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
TTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAGTGGTGTGGTTTATCGTCA > Exported/558909‑559036 | ttgGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGt > 1:3592948/1‑71 (MQ=255) ggTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCg > 1:4834167/1‑70 (MQ=255) gTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGa < 1:5145216/71‑1 (MQ=255) cTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGTATCGt < 1:2509527/71‑1 (MQ=255) cTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCg < 1:4622537/70‑1 (MQ=255) cTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCg < 1:3370055/70‑1 (MQ=255) cTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGt < 1:1168012/71‑1 (MQ=255) cGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTa > 1:2171554/1‑66 (MQ=255) cGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTg < 1:4481084/69‑1 (MQ=255) cGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTg < 1:2587475/69‑1 (MQ=255) cGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGt > 1:983826/1‑71 (MQ=255) cGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGt > 1:648688/1‑71 (MQ=255) aCCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGcc < 1:4582602/70‑1 (MQ=255) cgcgTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTc > 1:2157784/1‑71 (MQ=255) tctATCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCCGCTTTCCGACAGAATTGGCCGCAGGCCg > 1:1792202/3‑71 (MQ=255) cgTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTcc < 1:2524799/70‑1 (MQ=255) gTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCgg < 1:3187092/71‑1 (MQ=255) gTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCgg < 1:5559143/71‑1 (MQ=255) tCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCCGCTTTCCGACAGAATTGGCCg < 1:4474671/60‑1 (MQ=255) tCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCCGCTTTCCGACAGAATTGGCCGCAGGCCgg < 1:3590787/68‑1 (MQ=255) tCTTGCTGGCGGTATGGCGTTACAGTGGCTGCTGGGGCCGCTTTCCGACAGAATTGGCCGCAGGCCgg < 1:2676914/68‑1 (MQ=255) gcgggATGTTTTTACAATGGCTGCTGGGGCCGCTGTCgg < 1:5157700/39‑1 (MQ=255) gATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAg < 1:4317998/71‑1 (MQ=255) gTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCg > 1:367359/1‑45 (MQ=255) gTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCg > 1:3151194/1‑45 (MQ=255) tttttACAATGGCTGCTGGGGCCGCTGTCGGATCg < 1:2850000/35‑1 (MQ=255) tttttACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTcc < 1:1351681/50‑1 (MQ=255) tttACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTg > 1:2286765/1‑52 (MQ=255) tttACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGa > 1:776816/1‑53 (MQ=255) aCAGTGGCTGCTGGGGCCGCTTTCCGACAGAATTGGCCGCAGGCCg > 1:3574839/1‑46 (MQ=255) gctgctGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAGTGGTGTGGTTTATc < 1:1111768/70‑1 (MQ=255) gctgctGGGGCCGCAGTCGGATCGTATTGGTCGCCGTCCGGTGATGc > 1:150117/1‑47 (MQ=255) tgctgGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAgtggtgtggt > 1:507946/1‑63 (MQ=255) gctgGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAgtggtgtg > 1:3568688/1‑60 (MQ=255) gctgGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAGTGGTGTGGTTTATCGTCa > 1:2452505/1‑71 (MQ=255) ctgGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAGTGGTGTGGTTTATCGTc < 1:4031155/69‑1 (MQ=255) ggggCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAgtggtgtgg > 1:5454846/1‑58 (MQ=255) cGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCggg < 1:5176543/43‑1 (MQ=255) cGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCggg < 1:1160401/43‑1 (MQ=255) | TTGGGTTCCTACTTCGATGACCGCGTATCTGGCGGGCGGGATGTTTTTACAATGGCTGCTGGGGCCGCTGTCGGATCGTATTGGTCGCCGTCCGGTGATGCTGGCGGGAGTGGTGTGGTTTATCGTCA > Exported/558909‑559036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |