| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 594,816 | C→T | 17.4% | P42S (CCG→TCG) | ycaJ → | recombination protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 594,816 | 0 | C | T | 17.4% | 47.3 / 3.4 | 23 | P42S (CCG→TCG) | ycaJ | recombination protein |
| Reads supporting (aligned to +/- strand): ref base C (10/9); new base T (2/2); total (12/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGCAA > Exported/594748‑594880 | gTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCcg > 1:2640102/1‑71 (MQ=255) aGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCg < 1:1822432/71‑1 (MQ=255) caGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGaa > 1:1408822/1‑60 (MQ=255) aGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGTCGCGCGCTATCGAAGCCGGGCATTTa > 1:833369/1‑71 (MQ=255) aGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGTCGCGCGCTATCGAAGCCGGGCATTTa > 1:3430572/1‑71 (MQ=255) atatCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCAt > 1:4376735/1‑65 (MQ=255) tCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCAt < 1:1975698/62‑1 (MQ=255) tCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCt < 1:4103208/71‑1 (MQ=255) cAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATg < 1:2739034/69‑1 (MQ=255) cAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGAt > 1:712648/1‑71 (MQ=255) cAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGAt > 1:3931484/1‑71 (MQ=255) aCATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCctct > 1:919041/1‑71 (MQ=255) cATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGc < 1:2931663/44‑1 (MQ=255) aTTTGCTGGCTGCGGGGAAGCCGTTGTCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTgg < 1:3456301/71‑1 (MQ=255) aTTTGCTGGCTGCGGGGAAGCCGTTGTCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTgg < 1:3463173/71‑1 (MQ=255) ggctgCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGgccgc > 1:3016873/1‑71 (MQ=255) gAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTg < 1:2262326/54‑1 (MQ=255) aaGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGccgccg > 1:4550184/1‑63 (MQ=255) aGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCgg > 1:3499107/1‑70 (MQ=255) gCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGCa < 1:3452091/71‑1 (MQ=255) gCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGCa < 1:2960521/71‑1 (MQ=255) cGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGCaa > 1:5488688/1‑70 (MQ=255) ttGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCctct < 1:1742817/46‑1 (MQ=255) | GTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGCAA > Exported/594748‑594880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |