| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 832,398 | G→T | 6.0% | A286S (GCT→TCT) | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 832,398 | 0 | G | T | 6.0% | 378.7 / 5.6 | 116 | A286S (GCT→TCT) | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base G (55/54); new base T (4/3); total (59/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 | |||||||||||
Only 100 of 119 total aligned reads displayed.
CGGATGCTCACTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGC > Exported/832330‑832468 | cGGACGCCCACTTCTTTACCGAAGTACGCTACAAAGGCACTAAAACCATCGCCATTACCCCTGACTActct > 1:2756726/1‑71 (MQ=255)cGGACGCCCACTTCTTTACCGAAGTACGCTACAAAGGCACTAAAACCATCGCCATTACCCCTGACTActct > 1:3479817/1‑71 (MQ=255) ggATGCTCACTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGc > 1:1864301/1‑69 (MQ=255) ggACGCCCACTTCTTTACCGAAGTACGCTACAAAGGCACTAAAACCATCGCCATTACCCCTGACTACTCTg < 1:2691524/71‑1 (MQ=255) ggACGCCCACTTCTTTACCGAAGTACGCTACAAAGGCACTAAAACCATCGCCATTACCCCTGACTACTCTg < 1:5512562/71‑1 (MQ=255) gATGCTCACTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTg > 1:689125/1‑70 (MQ=255) aTGCTCACTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGaa < 1:4310725/71‑1 (MQ=255) tGCTCACTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGaaa < 1:2307398/71‑1 (MQ=255) tGCTCACTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGaa > 1:3174580/1‑70 (MQ=255) aCTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGc > 1:2624974/1‑70 (MQ=255) cttTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCaaa < 1:2724908/70‑1 (MQ=255) cttTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAAc > 1:3395995/1‑71 (MQ=255) cttTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAAc > 1:270543/1‑71 (MQ=255) cttTACTGAAGTGCGTTACAAAGGGACAAAAACTGTTGCCGTCACACCAGACTACGCTGAAATc > 1:3524381/1‑64 (MQ=255) tACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACtg < 1:2003354/70‑1 (MQ=255) aCTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCaa < 1:4275270/65‑1 (MQ=255) aCTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACtgtg > 1:5422094/1‑71 (MQ=255) aCTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACtgtg > 1:2901675/1‑71 (MQ=255) aCTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACtgt > 1:88103/1‑70 (MQ=255) cTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGc < 1:5286533/71‑1 (MQ=255) gAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGa > 1:5670754/1‑71 (MQ=255) aaGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAAc > 1:5057104/1‑63 (MQ=255) aaGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCg < 1:1822553/69‑1 (MQ=255) aGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATc < 1:1794494/71‑1 (MQ=255) aGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATc > 1:1294859/1‑71 (MQ=255) tGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGa < 1:517313/67‑1 (MQ=255) tGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCtg > 1:2701369/1‑71 (MQ=255) ttACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGtaa < 1:2958244/47‑1 (MQ=255) ttACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGaaa < 1:2893078/47‑1 (MQ=255) ttACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGaaa < 1:95249/47‑1 (MQ=255) ttACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACtgt < 1:617241/59‑1 (MQ=255) ttACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACtgt < 1:1713914/59‑1 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACTCTGAAATCGcc > 1:4828489/1‑50 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACTCTGAAATCGcc > 1:4834499/1‑50 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATc > 1:1235976/1‑47 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCaaa > 1:1711066/1‑53 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCa < 1:3783935/51‑1 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCa < 1:3993389/51‑1 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCa > 1:5662090/1‑51 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCa < 1:638277/51‑1 (MQ=255) aCAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGtggct < 1:2914552/70‑1 (MQ=255) aaaGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGtggctgg > 1:2249693/1‑70 (MQ=255) aaaGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGtggctgg > 1:4894099/1‑70 (MQ=255) aaGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGtggctgg < 1:4086787/69‑1 (MQ=255) ggACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCAcc > 1:1196310/1‑70 (MQ=255) ggACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCAcc > 1:4125620/1‑70 (MQ=255) gACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGa < 1:2448142/71‑1 (MQ=255) aCCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGaa < 1:4646452/71‑1 (MQ=255) ccAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCaaa < 1:63704/44‑1 (MQ=255) ccAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGaaa < 1:4162029/71‑1 (MQ=255) aaaaCTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGaaa > 1:1259197/1‑69 (MQ=255) aaaCTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGtggctggc < 1:2482576/61‑1 (MQ=255) aaaCTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCCCCGAAACa > 1:5118343/1‑70 (MQ=255) aaCTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAAc > 1:2172988/1‑41 (MQ=255) gTTGCCGTCACACCAGACTACGCTGAAAACGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCAc > 1:4448240/1‑71 (MQ=255) ttGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAgg < 1:3690683/66‑1 (MQ=255) ttGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCAcc < 1:1910169/71‑1 (MQ=255) ccGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGAt < 1:3196267/71‑1 (MQ=255) tCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACa < 1:894360/58‑1 (MQ=255) tCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGa < 1:3866823/67‑1 (MQ=255) cacaCCAGACTACGCTGAAATCGCCAAACTGTGCGATCtg > 1:2958692/1‑40 (MQ=255) cacaCCAGACTACGCTGAAATCGCCAAACTGTGCGATCtg > 1:2355399/1‑40 (MQ=255) cacaCCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGc > 1:2585835/1‑61 (MQ=255) cacaCCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCgg > 1:2149322/1‑71 (MQ=255) acacCAGACTACGCTGAAATCGCCAAACTGTGCGAt > 1:3032130/1‑36 (MQ=255) acacCAGACTACGCTGAAATCGCCAAACTGTGCGAt > 1:4251374/1‑36 (MQ=255) acacCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGaaa < 1:2837562/54‑1 (MQ=255) acacCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGaaa < 1:2830678/54‑1 (MQ=255) acacCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAgg > 1:592428/1‑58 (MQ=255) acacCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGc < 1:5383525/71‑1 (MQ=255) acCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCaa < 1:3964059/71‑1 (MQ=255) ccAGACTACGCTGAAATCGCCAAACTGTGCGATCTGtggctgg < 1:4590889/43‑1 (MQ=255) ccAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAAc < 1:5030950/52‑1 (MQ=255) cAGACTACGCTGAAATCGCCAAACTGTGCGATCTGtggc > 1:169297/1‑39 (MQ=255) cAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGTACCGAAAc > 1:532683/1‑51 (MQ=255) cAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAAc > 1:3821236/1‑51 (MQ=255) cAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAAc > 1:4357905/1‑51 (MQ=255) cAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATg > 1:4531944/1‑71 (MQ=255) cAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATg > 1:5291713/1‑71 (MQ=255) aGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATgg > 1:1044184/1‑71 (MQ=255) aGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATgg < 1:3169226/71‑1 (MQ=255) aGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATgg < 1:4082993/71‑1 (MQ=255) gACTACTCTGAAGTGGCCAAATTGTGCGACCAGTGGCTGGCACCGaaa > 1:5658483/1‑48 (MQ=19) gACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGgc < 1:2195511/71‑1 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCAcc < 1:2641041/56‑1 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCAcc < 1:2056672/56‑1 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCAcc < 1:2506091/56‑1 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCAcc < 1:4579405/56‑1 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGgcg > 1:3504627/1‑71 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGgcg > 1:4369683/1‑71 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGgcg > 1:3295111/1‑71 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGgcg > 1:2937726/1‑71 (MQ=255) aCTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGgc > 1:5640309/1‑70 (MQ=255) tACTCTGAAGTGGCCAAATTGTGCGACCAGTGGCTGGCACCGAAACAAGGCAct < 1:2780895/54‑2 (MQ=19) tACGCTGAAATCGCCAAACTGTGCGATCTGtggctgg < 1:2699977/37‑1 (MQ=255) tACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGa < 1:667677/43‑1 (MQ=255) tACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGa < 1:712533/43‑1 (MQ=255) tACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCt > 1:1171134/1‑71 (MQ=255) cGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTgg > 1:4875849/1‑71 (MQ=255) cGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTgg < 1:2331287/71‑1 (MQ=255) | CGGATGCTCACTTCTTTACTGAAGTGCGTTACAAAGGGACCAAAACTGTTGCCGTCACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGC > Exported/832330‑832468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |