New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported = 43683383 (1.130)559 (7.620) 72/96 NT 84.1% coding (546/546 nt) seqA regulatory protein for replication initiation
?Exported 1803907 = 128 (1.750)intergenic (+63/‑28) ygaH/mprA predicted inner membrane protein/DNA‑binding transcriptional regulator

Only 100 of 672 total aligned reads displayed.

ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/436765‑436833
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  >  Exported/1803907‑1803976
                                                                                                                                           
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                      <  1:97292/71‑1
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                      >  1:3226401/1‑71
 TCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                                     >  1:780757/1‑71
  CGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC                                                                    >  1:2475396/1‑71
  CGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC                                                                    >  1:5030776/1‑71
     ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:4426663/71‑1
      CACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 >  1:4496461/1‑70
         ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:4835129/71‑1
         ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:3048964/71‑1
          TCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:1892084/70‑1
          TCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             >  1:3185342/1‑70
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          >  1:137655/1‑71
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          >  1:2341243/1‑71
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:4341827/71‑1
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           <  1:1549037/70‑1
             TGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:274840/71‑1
             TGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:263157/71‑1
                 GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:3335273/71‑1
                  TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTC                                                    <  1:2816380/71‑1
                  TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:4888281/66‑1
                  TCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           <  1:2895385/64‑1
                    GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAC                                                                       >  1:2559853/1‑50
                    GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAC                                                                       >  1:4761921/1‑50
                     ATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCAT                                                  <  1:3781724/70‑1
                        CAATTCCCGGCGGATTTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:3453630/60‑1
                        CAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:1098788/60‑1
                         AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCC                                              >  1:3507930/1‑70
                          ATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             >  1:657656/1‑70
                            TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAAT                                          >  1:5160985/1‑71
                             CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                         >  1:4298793/1‑71
                               gGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCAT                                                  <  1:2281478/59‑1
                               CGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA                                       <  1:2780851/71‑1
                                  CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:3435004/46‑1
                                   GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:4212721/48‑1
                                   GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:104678/45‑1
                                      ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCG                                >  1:1940486/1‑71
                                       TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                               >  1:54968/1‑71
                                       TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                   <  1:4377845/51‑1
                                       TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:1154243/49‑1
                                       TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:4519358/49‑1
                                         GATTGAGGAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:907027/70‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:1686896/70‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              >  1:3994180/1‑70
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:3927841/70‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:2959883/70‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:1618076/70‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              >  1:3102222/1‑70
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:845463/55‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1361946/55‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:3393296/35‑1
                                          ATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            <  1:170102/71‑1
                                          ATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:2524451/1‑40
                                           TTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:4113134/1‑39
                                             GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC                                 >  1:1827234/1‑63
                                             GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTC                                 >  1:3710032/1‑63
                                             GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCA                                                   >  1:2854088/1‑45
                                              AGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:4045114/38‑1
                                               GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:807980/1‑35
                                               GAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:953949/1‑35
                                                AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                       >  1:1783550/1‑38
                                                 AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT                     >  1:1262490/1‑71
                                                  GGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATT                    >  1:5045837/1‑71
                                                   GTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:508256/45‑1
                                                    TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTG                   >  1:2114183/1‑70
                                                    TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTG                   >  1:2206707/1‑70
                                                    TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1656004/44‑1
                                                    TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1751869/44‑1
                                                    TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:4571366/36‑1
                                                    TTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                     <  1:101805/36‑1
                                                     TTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:5189665/1‑60
                                                     TTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:1177765/1‑60
                                                      TGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                           >  1:3860488/1‑44
                                                        CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA               <  1:471758/70‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGC          >  1:634851/1‑70
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:3273880/50‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:583123/50‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:4945087/50‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:373474/50‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATA                                     >  1:4153552/1‑43
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGG                                        <  1:2374730/40‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGG                                        <  1:1412698/40‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGG                                        <  1:2393508/40‑1
                                                             CTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGG                                        <  1:1327656/40‑1
                                                              TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAAC                <  1:4259531/63‑1
                                                              TATATAACGGCTGAAATTAATGAGGTCATACCCAAAT                                          >  1:3642925/1‑37
                                                               ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAAC                <  1:2589272/62‑1
                                                               ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATA                                     >  1:5061165/1‑41
                                                               ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATA                                     >  1:2421049/1‑41
                                                                TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA       >  1:4633067/1‑70
                                                                 CTAACGGCAGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:4475780/1‑48
                                                                  TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT    >  1:2172119/1‑71
                                                                  TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT    >  1:3014368/1‑71
                                                                  TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:5111739/45‑1
                                                                  TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:2244327/45‑1
                                                                   AACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATT   >  1:3890077/1‑71
                                                                    ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  >  1:2002362/1‑71
                                                                    ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT    <  1:714496/69‑1
                                                                    ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAA              >  1:3577944/1‑59
                                                                    ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAA              >  1:1481512/1‑59
                                                                    ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCC                       >  1:2047277/1‑50
                                                                                                                                           
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/436765‑436833
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  >  Exported/1803907‑1803976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.