Predicted mutation
evidence seq id position mutation freq annotation gene description
RA Exported 1,664,022 A→G 7.8% R400R (CGT→CGC guaA ← GMP synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*Exported1,664,0220AG 7.8% 263.1 / 9.7 89R400R (CGT→CGCguaAGMP synthetase
Reads supporting (aligned to +/- strand):  ref base A (38/44);  new base G (2/5);  total (40/49)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

AGTACTCTTTCTTCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCT  >  Exported/1663961‑1664091
                                                             |                                                                     
aGTACTCTTTCTTCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGc                                                              <  1:1457215/71‑1 (MQ=255)
aGTACTCTTTCTTCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGc                                                              <  1:467392/71‑1 (MQ=255)
    ctctTTCTTCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGt                                                          <  1:3421603/71‑1 (MQ=255)
      ctttcttCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGtag                                                        >  1:4486477/1‑69 (MQ=255)
      ctttcttCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCg                                                        >  1:1043004/1‑71 (MQ=255)
      ctttcttCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCg                                                        >  1:4616777/1‑71 (MQ=255)
      ctttcttCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCg                                                        >  1:4744374/1‑71 (MQ=255)
         tcttcACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTa                                                      <  1:123529/70‑1 (MQ=255)
          cttcacttcaCCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACTGTACAGCATGTCGTAc                                                     <  1:3064787/70‑1 (MQ=255)
          cttcacttcaCCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:528721/70‑1 (MQ=255)
          cttcacttcaCCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:1048961/70‑1 (MQ=255)
             cacttcacCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACg                                                    <  1:88332/68‑1 (MQ=255)
             cacttcacCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACg                                                    <  1:1661854/68‑1 (MQ=255)
              acttcacCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACgg                                                   <  1:3845360/68‑1 (MQ=255)
                 tcacCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGcc                                             >  1:3459166/1‑71 (MQ=255)
                   acCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCa                                           <  1:2388972/71‑1 (MQ=255)
                      cAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCt                                        >  1:4179993/1‑71 (MQ=255)
                      cAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCt                                        >  1:3896723/1‑71 (MQ=255)
                      cAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCt                                        >  1:908798/1‑71 (MQ=255)
                      cAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCt                                        >  1:1198864/1‑71 (MQ=255)
                       aGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTc                                       <  1:1804236/71‑1 (MQ=255)
                       aGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTc                                       <  1:2266476/71‑1 (MQ=255)
                       aGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTc                                       <  1:3074858/71‑1 (MQ=255)
                          acacGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGGCGTACGGCAGGCCCAGCTCCa                                     <  1:2878320/70‑1 (MQ=255)
                               aaCGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCaa                               >  1:1413873/1‑71 (MQ=255)
                                 cGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCa                                                 <  1:1850033/51‑1 (MQ=255)
                                    cAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:821432/44‑1 (MQ=255)
                                    cAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:5090592/44‑1 (MQ=255)
                                    cAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:1933782/44‑1 (MQ=255)
                                    cAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:4475641/44‑1 (MQ=255)
                                    cAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:2084574/44‑1 (MQ=255)
                                    cAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGGCGTAc                                                     <  1:4117009/44‑1 (MQ=255)
                                    cAAGGCCTGGGCCCGGGAACGGGTGACGGTACAGCATGTCGTAc                                                     <  1:2522327/44‑1 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTAc                         >  1:1754985/1‑70 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTAc                         >  1:1024488/1‑70 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACg                        >  1:3997295/1‑71 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACg                        >  1:4000773/1‑71 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACg                        >  1:1214456/1‑71 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACg                        >  1:4037499/1‑71 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACg                        >  1:366093/1‑71 (MQ=255)
                                      aGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACg                        >  1:2832152/1‑71 (MQ=255)
                                       ggCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTa                                                      <  1:2332097/40‑1 (MQ=255)
                                       ggCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTa                                                      <  1:3573669/40‑1 (MQ=255)
                                          cTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACt                    <  1:3449006/71‑1 (MQ=255)
                                                ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:343356/53‑1 (MQ=255)
                                                ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:1503209/53‑1 (MQ=255)
                                                ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:3514854/53‑1 (MQ=255)
                                                ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:4936268/53‑1 (MQ=255)
                                                ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:2031173/53‑1 (MQ=255)
                                                ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:2655393/53‑1 (MQ=255)
                                                ccGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:1735353/53‑1 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACGAAt                              >  1:240993/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:1217841/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:2270316/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:3406977/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:3103929/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:2322804/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:1558924/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:2825778/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:2768266/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:57622/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:2622858/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAAt                              >  1:806880/1‑53 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCttt            >  1:4807250/1‑71 (MQ=255)
                                                  gggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCtt             >  1:1396368/1‑70 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCttt            >  1:244365/1‑70 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:3829704/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:3781473/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:1895575/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:3679304/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:131728/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:4388070/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:1249020/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:4500411/71‑1 (MQ=255)
                                                   ggAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:202627/71‑1 (MQ=255)
                                                    gAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           <  1:2531309/70‑1 (MQ=255)
                                                    gAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTg           >  1:304776/1‑70 (MQ=255)
                                                     aaCGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGAc                                  >  1:3666372/1‑46 (MQ=255)
                                                     aaCGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGaa         >  1:1648502/1‑71 (MQ=255)
                                                     aaCGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGaa         >  1:1449930/1‑71 (MQ=255)
                                                          gTGGCGGTAGACCATGTCGTAGGGCAGGCCCAGCTCCAGGCCGATCTTGCGCACTTCGTCCTTGAACAgtt    <  1:3250474/71‑3 (MQ=255)
                                                          gTGGCGGTAGACCATGTCGTAGGGCAGGCCCAGCTCCAGGCCGATCTTGCGCACTTCGTCCTTGAACAgtt    <  1:5014705/71‑3 (MQ=255)
                                                          gTGGCGGTAGACCATGTCGTAGGGCAGGCCCAGCTCCAGGCCGATCTTGCGCACTTCGTCCTTGAACAgtt    <  1:4002955/71‑3 (MQ=255)
                                                          gTGGCGGTAGACCATGTCGTAGGGCAGGCCCAGCTCCAGGCCGATCTTGCGCACTTCGTCCTTGAACAgtt    <  1:118674/71‑3 (MQ=255)
                                                          gTGGCGGTAGACCATGTCGTAGGGCAGGCCCAGCTCCAGGCCGATCTTGCGCACTTCGTCCTTGAACAgtt    <  1:2730231/71‑3 (MQ=255)
                                                          gTGGCGGTAGACCATGTCGTAGGGCAGGCCCAGCTCCAGGCCGATCTTGCGCACTTCGTCCTTGAACAgtt    >  1:1057193/1‑69 (MQ=255)
                                                          gTGGCGGTAGACCATGTCGTAGGGCAGGCCCAGCTCCAGGCCGATCTTGCGCACTTCGTCCTTGAACAgtt    >  1:3863788/1‑69 (MQ=255)
                                                          gTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAAAAGct    >  1:3510697/1‑71 (MQ=255)
                                                           tGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCa                                <  1:3795137/42‑1 (MQ=255)
                                                             aCGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCa                      >  1:1793439/1‑50 (MQ=255)
                                                             aCGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCAc                     >  1:689712/1‑51 (MQ=255)
                                                             aCGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGctct  <  1:2207894/70‑1 (MQ=255)
                                                             |                                                                     
AGTACTCTTTCTTCACTTCACCCAGAACACGAACGCCAAGGCCTGGTCCCGGGAACGGGTGACGGTACAGCATGTCGTACGGCAGGCCCAGCTCCAGACCAATCTTACGCACTTCGTCTTTGAACAGCTCT  >  Exported/1663961‑1664091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: