| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,830,030 | T→A | 6.5% | I202I (ATT→ATA) | pphB → | serine/threonine‑specific protein phosphatase 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,830,030 | 0 | T | A | 6.5% | 181.7 / 4.1 | 61 | I202I (ATT→ATA) | pphB | serine/threonine‑specific protein phosphatase 2 |
| Reads supporting (aligned to +/- strand): ref base T (33/24); new base A (2/2); total (35/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
GATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTT > Exported/1829965‑1830094 | gATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATAc > 1:4235594/1‑71 (MQ=255) attTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCgg < 1:9147/70‑1 (MQ=255) ttATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATc < 1:518242/70‑1 (MQ=255) ttATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATc < 1:4831225/70‑1 (MQ=255) tataTTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATc < 1:4898284/69‑1 (MQ=255) tatTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCg < 1:1842496/71‑1 (MQ=255) tGGTCATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATAGATACCGGATCGCCGaa > 1:3768535/1‑69 (MQ=255) tGGTCATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATAGATACCGGATCGCCGaa > 1:2290604/1‑69 (MQ=255) ggACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:4281803/70‑1 (MQ=255) ggACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa > 1:2696899/1‑70 (MQ=255) ggACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAg > 1:3661351/1‑71 (MQ=255) ggACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAg > 1:4865658/1‑71 (MQ=255) tatGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAgcgggc > 1:3705099/1‑71 (MQ=255) tatGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAgcgggc > 1:1192638/1‑71 (MQ=255) tatGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAgcgggc > 1:1916859/1‑71 (MQ=255) tgatgTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAgcgggcg > 1:2494847/1‑70 (MQ=255) tgatgTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAgcgggc > 1:902661/1‑69 (MQ=255) gatgTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGggcggc > 1:2988742/1‑71 (MQ=255) atgTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCt < 1:4096251/71‑1 (MQ=255) atgTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCt < 1:1040255/71‑1 (MQ=255) tGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCa < 1:1292698/70‑1 (MQ=255) tGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCAt > 1:2600598/1‑71 (MQ=255) tGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCAt > 1:3360413/1‑71 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:5005430/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:3824558/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:3818308/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:4764766/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:3373993/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:3058486/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:2277201/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:2112955/50‑1 (MQ=255) cATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:1028794/50‑1 (MQ=255) aTTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACa < 1:765008/49‑1 (MQ=255) cAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTta > 1:4769714/1‑65 (MQ=255) cAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTataaaa > 1:3259977/1‑70 (MQ=255) cAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTataaaa < 1:549801/70‑1 (MQ=255) aGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTataaaata < 1:3870600/71‑1 (MQ=255) cGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTta > 1:2711091/1‑61 (MQ=255) gTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTataaaat < 1:4435566/66‑1 (MQ=255) tCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAgcggg > 1:924101/1‑44 (MQ=255) tCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAagtag > 1:1703142/1‑71 (MQ=255) tCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAagtag > 1:4800063/1‑71 (MQ=255) cGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTataaaataa > 1:5063903/1‑65 (MQ=255) cGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTataaaataa > 1:2772502/1‑65 (MQ=255) cGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTataaaataa > 1:437009/1‑65 (MQ=255) cGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAagtagt > 1:3994631/1‑71 (MQ=255) gCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAag < 1:2958437/66‑1 (MQ=255) tAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTtat > 1:1013602/1‑55 (MQ=255) tAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAagta > 1:4896165/1‑66 (MQ=255) tAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAagta > 1:4682932/1‑66 (MQ=255) aaCCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAagta > 1:495049/1‑65 (MQ=255) aaCCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAagta > 1:898277/1‑65 (MQ=255) aaCCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCa > 1:3281287/1‑71 (MQ=255) aaCCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCa > 1:67739/1‑71 (MQ=255) aCCAGATTTATATTGATAACGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGtctc < 1:2182786/69‑1 (MQ=255) aTTTATATAGATACCGGATCGCCGAAAAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGtc < 1:983024/62‑1 (MQ=255) aTTTATATAGATACCGGATCGCCGAAAAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGtc < 1:610436/62‑1 (MQ=255) ttATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGcttctt > 1:874459/1‑71 (MQ=255) ttATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGcttctt > 1:4835751/1‑71 (MQ=255) ttATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGcttct > 1:1893082/1‑70 (MQ=255) ttATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGcttct > 1:4799887/1‑70 (MQ=255) | GATTATTTTATATTTGGACATATGATGTTTGATAACATTCAGACGTTCGCTAACCAGATTTATATTGATACCGGATCGCCGAACAGCGGGCGGCTGTCATTTTATAAAATAAAGTAGTCTCATGCTTCTT > Exported/1829965‑1830094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |