| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,884,163 | G→A | 12.2% | A107V (GCA→GTA) | rumA ← | 23S rRNA (uracil‑5)‑methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,884,163 | 0 | G | A | 12.2% | 221.6 / 17.1 | 82 | A107V (GCA→GTA) | rumA | 23S rRNA (uracil‑5)‑methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (48/24); new base A (5/5); total (53/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGCGATAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCATACGCCAA > Exported/1884097‑1884232 | cGGCGATAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGc < 1:2564668/71‑1 (MQ=255) ggCGATAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCa > 1:3518171/1‑71 (MQ=255) cGATAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACt < 1:5000422/71‑1 (MQ=255) tAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACttt < 1:2930917/70‑1 (MQ=255) tAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACttt < 1:3241174/70‑1 (MQ=255) tAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACttt < 1:671632/70‑1 (MQ=255) gCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCCCTTTTg < 1:668480/70‑1 (MQ=255) gCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGc < 1:2400691/71‑1 (MQ=255) gCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACtttt > 1:1819413/1‑69 (MQ=255) gCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACTTTTg > 1:1912843/1‑70 (MQ=255) gCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACTTTTg > 1:230310/1‑70 (MQ=255) gCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACTTTTg > 1:2393985/1‑70 (MQ=255) gCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACTTTTg > 1:4306419/1‑70 (MQ=255) cccAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTACCGCACttt < 1:2688621/66‑1 (MQ=255) aaCATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCgctgct > 1:2971957/1‑71 (MQ=255) aaCATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCgctgct > 1:1488176/1‑71 (MQ=255) aaCATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCgctgct > 1:992253/1‑71 (MQ=255) aaCATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCgctgct > 1:4669468/1‑71 (MQ=255) aaCATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCgctgc > 1:1572524/1‑70 (MQ=255) cATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGt < 1:2414434/71‑1 (MQ=255) cATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGt < 1:1450906/71‑1 (MQ=255) tCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt < 1:1090202/60‑1 (MQ=255) tCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCg > 1:3821525/1‑62 (MQ=255) tCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCg > 1:3161042/1‑62 (MQ=255) tCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCg > 1:3154837/1‑62 (MQ=255) tCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCg > 1:780883/1‑62 (MQ=255) cGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTaaa > 1:875944/1‑71 (MQ=255) gCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt < 1:1418646/57‑1 (MQ=255) aTCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTc < 1:3774147/55‑1 (MQ=255) aTCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCAc > 1:186852/1‑71 (MQ=255) aTCACTTCAGAGACATCGTGATTCATTAATCGGGCGAGTACCGCACttt < 1:3003004/49‑1 (MQ=38) aCTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCt > 1:512646/1‑71 (MQ=255) cAGAGACTTCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCa > 1:1323151/1‑63 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACtt > 1:1164913/1‑41 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt > 1:2890403/1‑47 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt > 1:4117549/1‑47 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt > 1:4027824/1‑47 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt > 1:3633978/1‑47 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt > 1:3599245/1‑47 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt > 1:3158493/1‑47 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCtt > 1:2825661/1‑47 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCa > 1:3143274/1‑63 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCa > 1:2558516/1‑63 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCa > 1:3435782/1‑63 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCa > 1:3468699/1‑63 (MQ=255) cAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCa > 1:2932444/1‑63 (MQ=255) cATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGtgttgt < 1:2804672/71‑1 (MQ=255) aTCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTgttgtt > 1:4525975/1‑71 (MQ=255) aTCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTgttgtt > 1:2664804/1‑71 (MQ=255) tCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATc < 1:1442597/53‑1 (MQ=255) tCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATc < 1:1669993/53‑1 (MQ=255) tCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATc < 1:2586251/53‑1 (MQ=255) tttCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCt < 1:4668443/68‑1 (MQ=255) tttCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGCAAATCCACGCTGGCGTGttgttg < 1:597395/66‑1 (MQ=255) tttCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGCAAATCCACGCTGGCGTGttgttg < 1:555096/66‑1 (MQ=255) tttCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGCAAATCCACGCTGGCGTGttgttg < 1:4353136/66‑1 (MQ=255) ttCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGa > 1:3020820/1‑69 (MQ=255) ttCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGa > 1:4684658/1‑69 (MQ=255) ttCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGa > 1:2740244/1‑69 (MQ=255) tCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAg > 1:1660240/1‑71 (MQ=255) tCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAg > 1:2913785/1‑71 (MQ=255) tCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAg > 1:2213214/1‑71 (MQ=255) tCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAg > 1:2679409/1‑71 (MQ=255) tCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAg > 1:5080731/1‑71 (MQ=255) tCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAg > 1:2434288/1‑71 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAAt > 1:2799467/1‑40 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAAt > 1:3411319/1‑40 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAAt > 1:171219/1‑40 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAAt > 1:2965905/1‑40 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAAt > 1:5142365/1‑40 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCg > 1:3608888/1‑51 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCg > 1:2647762/1‑51 (MQ=255) aaTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCg > 1:4103195/1‑51 (MQ=255) aTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCAcct < 1:4642529/71‑2 (MQ=255) aTCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCg < 1:4636158/71‑1 (MQ=255) aTCGGGCGAGTGCCGCACTTTTGATTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCg < 1:2416813/71‑1 (MQ=255) gggCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCa < 1:524512/70‑1 (MQ=255) gggCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCa < 1:2862973/70‑1 (MQ=255) gggCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCa < 1:452873/70‑1 (MQ=255) gTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCATACGcc > 1:4343948/1‑70 (MQ=255) gTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCATACGcc > 1:4209712/1‑70 (MQ=255) tGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCATACGCCaa < 1:3415817/71‑1 (MQ=255) | CGGCGATAGCCCCAGGGAACATCGGCGATCACTTCAGAGACATCGTGTTTCATTAATCGGGCGAGTGCCGCACTTTTGCTTCGCTGCTGTAAATCCACGCTGGCGTGTTGTTGCTGACAGCCACCGCATACGCCAA > Exported/1884097‑1884232 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |