| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,155,529 | A→G | 14.3% | intergenic (+40/+146) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,155,529 | 0 | A | G | 14.3% | 87.3 / 6.9 | 35 | intergenic (+40/+146) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| Reads supporting (aligned to +/- strand): ref base A (14/16); new base G (3/2); total (17/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
TGTATAAAGATATTTATCAGAACAATTAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCAAA > Exported/2155461‑2155599 | tGTATAAAGATATTTATCAGAACAATTAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGattat < 1:3468451/70‑1 (MQ=255) tataAAGATATTTATCAGAACAATTAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTg < 1:2947863/70‑1 (MQ=255) tataAAGATATTTATCAGAACAATTAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTg < 1:5105805/70‑1 (MQ=255) aaGATATTTATCAGAACAATTAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACaaa < 1:3609270/71‑1 (MQ=255) tCAGAACAATTAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCttt < 1:3591502/70‑1 (MQ=255) ttAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGt > 1:4284690/1‑54 (MQ=255) ttAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTa > 1:437690/1‑66 (MQ=255) ttAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCg < 1:411054/71‑1 (MQ=255) gTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGa < 1:5029606/70‑1 (MQ=255) aaaGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc > 1:1094493/1‑71 (MQ=255) gAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGt < 1:407887/52‑1 (MQ=255) aCCCCGGCACATGGCCGGGGCTTCAGATTATTGACaa < 1:697930/37‑1 (MQ=255) cGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCt > 1:735555/1‑71 (MQ=255) cGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCt > 1:4380898/1‑71 (MQ=255) cacaTGGCCGGGGCTTCAGATTATTGACAAAGTGCGCtt > 1:2301868/1‑39 (MQ=255) cacaTGGCCGGGGCTTCAGATTATTGACAAAGTGCGCtt > 1:1930754/1‑39 (MQ=255) ggCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCgg > 1:1751575/1‑70 (MQ=255) ggCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGc > 1:841965/1‑71 (MQ=255) ggCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAAAGCCTTATCCGGc > 1:222517/1‑71 (MQ=255) ggCCGCGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTaa > 1:4171027/1‑57 (MQ=255) tacAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:4326983/62‑1 (MQ=11) tacAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:4278650/62‑1 (MQ=11) tCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGcc > 1:1863045/1‑52 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 1:4166163/1‑64 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 1:3280805/1‑64 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 1:2267739/1‑64 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:2148579/1‑46 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:3370355/1‑46 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:763949/44‑1 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:656312/44‑1 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:893721/44‑1 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:982521/44‑1 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:2551119/44‑1 (MQ=255) aGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:296044/44‑1 (MQ=255) gATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:3902879/43‑1 (MQ=255) gATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:2477515/43‑1 (MQ=255) attattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:1085459/42‑1 (MQ=255) attattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:4628730/42‑1 (MQ=255) attattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:2408081/42‑1 (MQ=255) attattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:777712/42‑1 (MQ=255) attattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:1468123/42‑1 (MQ=255) attattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTa < 1:4047696/42‑1 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:2119871/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:2209558/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:1879137/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:869525/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:24202/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:5063918/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:3842137/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:2540806/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:2768067/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:3133601/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:4130201/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATgcggcg > 1:3455003/1‑39 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAt > 1:4585261/1‑65 (MQ=255) ttattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGc > 1:4591056/1‑70 (MQ=255) tattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt < 1:4136959/39‑1 (MQ=255) tattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTaaa > 1:3627590/1‑42 (MQ=255) tattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCa > 1:2172985/1‑70 (MQ=255) tattGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCa > 1:3840130/1‑70 (MQ=255) attGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCaaa > 1:2696007/1‑71 (MQ=255) attGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCaaa > 1:3062189/1‑71 (MQ=255) | TGTATAAAGATATTTATCAGAACAATTAGTCAAAAAGAAACCCCGGCACATGGCCGGGGCTTCAGATTATTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCAAA > Exported/2155461‑2155599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |