| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,595,785 | C→G | 12.6% | T271T (ACG→ACC) | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,595,785 | 0 | C | G | 12.6% | 217.2 / 19.6 | 79 | T271T (ACG→ACC) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base C (39/30); new base G (5/5); total (44/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
TAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATGGCGCT > Exported/2595717‑2595853 | tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCTAGGGGGCACCGCGCAGGACTTTACCCg > 1:1994388/1‑70 (MQ=255)tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAccc > 1:3169769/1‑69 (MQ=255)tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCg > 1:302012/1‑70 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTa < 1:489454/70‑1 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:3996750/1‑71 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:1811029/1‑71 (MQ=255) aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:824228/1‑71 (MQ=255) aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg > 1:471589/1‑70 (MQ=255) aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGc < 1:4850556/71‑1 (MQ=255) gATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa < 1:5047097/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:4321383/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3809251/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3476054/71‑1 (MQ=255) tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGAAt < 1:196274/70‑1 (MQ=255) aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:1059677/1‑71 (MQ=255) aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:2745877/1‑71 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:3760988/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:4590037/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:2363060/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:2643713/1‑70 (MQ=255) tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcc > 1:2919275/1‑70 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:4383066/69‑2 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:3026550/69‑2 (MQ=255) gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:2800717/69‑2 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:4328686/55‑1 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:1917654/55‑1 (MQ=255) gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc < 1:1119414/71‑1 (MQ=255) agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:786577/50‑1 (MQ=255) agaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTa < 1:2224188/50‑1 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:3299263/1‑55 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:2173623/1‑55 (MQ=255) gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:1095870/1‑55 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3610010/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:414333/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:5078090/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3255475/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:2933304/62‑1 (MQ=255) aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCCTATTAATCGCATGACcgcg < 1:728229/62‑1 (MQ=255) agaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa > 1:2548385/1‑48 (MQ=255) gaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:4425836/1‑62 (MQ=255) tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:3021015/71‑1 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:3648213/1‑70 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:4341645/1‑70 (MQ=255) gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:1406680/1‑70 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:1650575/1‑51 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGAc > 1:5147509/1‑52 (MQ=255) aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaa < 1:1789208/70‑1 (MQ=255) tGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGcgacga > 1:367128/1‑61 (MQ=255) ccAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:2629714/38‑1 (MQ=255) ccAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc < 1:2419454/70‑1 (MQ=255) cgCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:4579620/45‑2 (MQ=255) tcACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:2404317/44‑2 (MQ=255) cACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaat > 1:1948552/1‑56 (MQ=255) cACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaat > 1:1514605/1‑56 (MQ=255) cACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaat > 1:2505166/1‑56 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc > 1:37659/1‑58 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc > 1:365335/1‑58 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc > 1:3594951/1‑58 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc > 1:351181/1‑58 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc > 1:816324/1‑58 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATc > 1:3270335/1‑58 (MQ=255) gcgcAGGACTTTACCCGTATTAATCGCATGACCGCGTGTAGCGACGACAAATAATATc > 1:3430696/1‑58 (MQ=255) cAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCt > 1:3385120/1‑70 (MQ=255) cAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTg > 1:862131/1‑71 (MQ=255) cAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTg < 1:4945267/71‑1 (MQ=255) ggACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaat < 1:1812008/47‑1 (MQ=255) gACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:701102/49‑1 (MQ=255) gACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:963849/49‑1 (MQ=255) gACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:3044714/49‑1 (MQ=255) aatttACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAg > 1:3433485/3‑53 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:1092064/48‑1 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:1945603/48‑1 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:1987051/48‑1 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataa > 1:4658755/1‑47 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataa > 1:1286755/1‑47 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataa > 1:2027668/1‑47 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAaataa > 1:2180914/1‑47 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAg > 1:4102148/1‑53 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAg > 1:906988/1‑53 (MQ=255) aCTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAg > 1:3809427/1‑53 (MQ=255) cccGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATGGCGCt < 1:2250904/71‑1 (MQ=255) cccGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATGGCGCt < 1:3293853/71‑1 (MQ=255) cccGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATGGCGCt < 1:5062088/71‑1 (MQ=255) ccGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCa < 1:497072/45‑1 (MQ=255) cGTATTAATCGCATGACCGCGTTTAGCGACGACAaataat < 1:72146/40‑1 (MQ=255) | TAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAATAATATCAGCGCGCCCACAGCTGCAATGGCGCT > Exported/2595717‑2595853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |