| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 204,556 | A→G | 100% | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 204,556 | 0 | A | G | 100.0% | 215.3 / NA | 68 | intergenic (+156/‑28) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/53); total (15/53) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGT > Exported/204495‑204623 | ttGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:1339237/71‑1 (MQ=255)ttGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:421458/71‑1 (MQ=255)ttGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:1818606/71‑1 (MQ=255) gAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGaa < 1:1545591/70‑1 (MQ=255) aaCACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACa < 1:2440330/71‑1 (MQ=255) aaCACTGAACAATGAAAGTTGTTCGTGAGTCTCACAAATTTTCGCAACACGATGATGGATCGCAAGAAAc < 1:1486492/70‑1 (MQ=11) aacaatGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCtta < 1:5147842/69‑2 (MQ=11) aatgAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAAc < 1:2914492/57‑1 (MQ=11) aatgAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAAc < 1:2541469/57‑1 (MQ=11) atgAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCgg < 1:5086053/65‑1 (MQ=255) tgAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCgg < 1:2121468/65‑1 (MQ=255) gttgttCGTGAGTCTCTCATATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGt < 1:4510493/71‑1 (MQ=255) gttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGt > 1:1107099/1‑71 (MQ=21) gttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGt < 1:3279877/71‑1 (MQ=21) ttgttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGt < 1:2629883/70‑1 (MQ=25) gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTa < 1:4399086/70‑1 (MQ=25) gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTa < 1:3440384/70‑1 (MQ=25) gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTa < 1:640884/70‑1 (MQ=25) gttCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTa < 1:289498/70‑1 (MQ=25) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:1551790/45‑1 (MQ=255) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:4709638/45‑1 (MQ=255) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:3596840/45‑1 (MQ=255) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:466801/45‑1 (MQ=255) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:3654811/45‑1 (MQ=255) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:1380303/45‑1 (MQ=255) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:673179/45‑1 (MQ=255) tCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:4210044/45‑1 (MQ=255) cGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCtt > 1:4636902/1‑52 (MQ=255) aGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAg < 1:2546100/39‑1 (MQ=255) aGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAAc > 1:2680804/1‑43 (MQ=255) aGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAAc > 1:4563523/1‑43 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:1362655/36‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:4749675/36‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:2615811/36‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:4844382/36‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:4854082/36‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:2499210/36‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGa < 1:244082/36‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAAc < 1:3148251/39‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAAc < 1:3154443/39‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAAc < 1:3826130/39‑1 (MQ=255) tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCggg < 1:2924734/48‑1 (MQ=255) tcAAATTTTCGCAACACGATGATTGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:5193992/68‑1 (MQ=255) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:4721156/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:4981952/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:1993123/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:1408243/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:4002543/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:3637174/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:3429450/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc < 1:2976122/68‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg < 1:809323/69‑1 (MQ=25) tcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg < 1:3683325/69‑1 (MQ=25) cAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa > 1:4348439/1‑70 (MQ=25) cAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa > 1:4763756/1‑70 (MQ=25) aaTTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTacac < 1:834637/71‑1 (MQ=21) aaTTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTacac < 1:2547807/71‑1 (MQ=21) aTTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACg > 1:2554921/1‑71 (MQ=21) gCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGAt > 1:4382530/1‑71 (MQ=21) gCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGAt > 1:4759568/1‑71 (MQ=21) gCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGAt > 1:1595929/1‑71 (MQ=21) aaCACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGc > 1:4178745/1‑71 (MQ=21) acacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc > 1:962937/1‑55 (MQ=255) acacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc > 1:5018019/1‑55 (MQ=255) acacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc > 1:1630063/1‑55 (MQ=255) cacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGAt < 1:3064305/67‑1 (MQ=25) cacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGAt < 1:2444476/67‑1 (MQ=25) cacGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcc > 1:2912135/1‑70 (MQ=25) gatggATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAg > 1:2299481/1‑71 (MQ=21) gatggATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAg > 1:1182680/1‑71 (MQ=21) atggATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGt < 1:577255/71‑1 (MQ=21) | TTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGCAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGT > Exported/204495‑204623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |