| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 275,785 | G→A | 13.5% | R130R (CGC→CGT) | cyoE ← | protoheme IX farnesyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 275,785 | 0 | G | A | 13.5% | 192.9 / 17.9 | 74 | R130R (CGC→CGT) | cyoE | protoheme IX farnesyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (27/37); new base A (4/6); total (31/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
CGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCACCCCCAGCCAGCAGGCCAGC > Exported/275727‑275854 | cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTAc < 1:3142322/71‑1 (MQ=255) tCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:3986820/61‑1 (MQ=255) tCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:2782101/61‑1 (MQ=255) aCCGGCGGCGCAGCGCCGGAGAGCGCTCCAATCAACGTGCCGTAGACAGAGTGGCGtt > 1:4628987/1‑58 (MQ=255) aCCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtttg > 1:4588113/1‑59 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt > 1:1979808/1‑57 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTa > 1:1755552/1‑64 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta > 1:1748151/1‑71 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta < 1:3920803/71‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta > 1:3985082/1‑71 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta < 1:587487/71‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta < 1:647212/71‑1 (MQ=255) ggcggcGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCtata < 1:231100/71‑1 (MQ=255) ggcggcGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCtata < 1:4844492/71‑1 (MQ=255) ggaggcgCAGCGCCGGAGAGCGAACCAATCAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCtata < 1:3986980/68‑1 (MQ=255) ggaggcgCAGCGCCGGAGAGCGAACCAATCAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCtata < 1:3221242/68‑1 (MQ=255) ggaggcgCAGCGCCGGAGAGCGAACCAATCAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCtata < 1:3544004/68‑1 (MQ=255) ggaggcgCAGCGCCGGAGAGCGAACCAATCAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCtata < 1:2368056/68‑1 (MQ=255) gcggcgCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCtata > 1:4447083/1‑70 (MQ=255) gaggcgCAGCGCCGGAGAGCGAACCAATCAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCtata < 1:1735597/68‑1 (MQ=255) gaggcgCAGCGCCGGAGAGCGAACCAATCAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCtata < 1:2728495/68‑1 (MQ=255) gcgcAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACATAGTGGCGTTTCATGTa < 1:2284072/58‑1 (MQ=255) gcgcAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTa < 1:919926/58‑1 (MQ=255) gcgcAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTa < 1:4120523/58‑1 (MQ=255) gcgcAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTa < 1:4242085/58‑1 (MQ=255) gcgcAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTa < 1:4422122/58‑1 (MQ=255) gcgcAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGATTCATGTa < 1:4527918/58‑1 (MQ=255) cgcAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGc < 1:332874/71‑1 (MQ=255) agagCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTAGAGGCTATAAACGCCGCCATAAAcc > 1:4686549/1‑71 (MQ=255) gagagaACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAc > 1:2182092/1‑69 (MQ=255) agCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTc < 1:114723/39‑1 (MQ=255) agCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTc < 1:5159024/39‑1 (MQ=255) agCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTc < 1:5122471/39‑1 (MQ=255) gCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt > 1:2352134/1‑36 (MQ=255) gCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGttc > 1:3957869/1‑42 (MQ=255) gCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATaaa > 1:1627046/1‑54 (MQ=255) gCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATaaa > 1:1751736/1‑54 (MQ=255) gCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTAAAGGCTATaaa > 1:2226716/1‑54 (MQ=255) cGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt > 1:4293477/1‑35 (MQ=255) cGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt > 1:1357461/1‑39 (MQ=255) cGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt > 1:265585/1‑39 (MQ=255) cGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt > 1:1919448/1‑39 (MQ=255) gAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATa < 1:1359386/62‑1 (MQ=255) gAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATa < 1:20914/62‑1 (MQ=255) gAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATa < 1:4113407/62‑1 (MQ=255) aaCCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAg < 1:3591443/71‑1 (MQ=255) aaTCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCa < 1:3948864/71‑1 (MQ=255) aTCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCTCAAAGCCCAt < 1:4237202/71‑1 (MQ=255) aTCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCAt < 1:1974583/71‑1 (MQ=255) aTCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCAt < 1:830229/71‑1 (MQ=255) cAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATc > 1:2980946/1‑70 (MQ=255) cAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCa > 1:897753/1‑71 (MQ=255) cAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCa > 1:2259594/1‑71 (MQ=255) cAAGGTGCCGTAGACAGAATGACGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCa > 1:2975155/1‑71 (MQ=255) aaCGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg > 1:2543747/1‑36 (MQ=255) aaCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc > 1:889031/1‑37 (MQ=255) aaCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc > 1:2405654/1‑37 (MQ=255) aaCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc > 1:5026328/1‑37 (MQ=255) aaCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCAtggg > 1:908327/1‑68 (MQ=255) aaCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCAtggg > 1:4314018/1‑68 (MQ=255) aaCGTGCCGTAGACAGAGTGGCGATTCATGTACAg > 1:5167827/1‑35 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:4714381/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:120653/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:523196/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:1208184/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:1319475/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:4302455/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:2232473/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAAcc < 1:3946307/56‑1 (MQ=255) aCGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCAcc > 1:1147603/1‑71 (MQ=255) gACAGAGTGGCGTTTCATGTAAAGGCTATAAACGCCGACATAAACCACAAAGCCCATCACCCccagccag > 1:4073825/1‑70 (MQ=255) tGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCAcccc < 1:2754027/56‑1 (MQ=255) tGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCAcccc < 1:4079880/56‑1 (MQ=255) tGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCAcccc < 1:3020647/56‑1 (MQ=255) ggCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCACCCCCAGCCAGCAGGCCAGc > 1:3216627/1‑71 (MQ=255) | CGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGACATAAACCACAAAGCCCATCACCCCCAGCCAGCAGGCCAGC > Exported/275727‑275854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |