| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 61,968 | A→G | 10.6% | N497N (AAT→AAC) | polB ← | DNA polymerase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 61,968 | 0 | A | G | 10.6% | 179.4 / 11.0 | 66 | N497N (AAT→AAC) | polB | DNA polymerase II |
| Reads supporting (aligned to +/- strand): ref base A (39/20); new base G (2/5); total (41/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.48e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01 | |||||||||||
TGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGC > Exported/61898‑62037 | tGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCa < 1:4895270/71‑1 (MQ=255)tGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCa < 1:4050852/71‑1 (MQ=255) aTCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCat < 1:529948/71‑1 (MQ=255) aTCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCat < 1:4960578/71‑1 (MQ=255) aTCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCat < 1:1848242/71‑1 (MQ=255) aTCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCat < 1:254312/71‑1 (MQ=255) cgacgaTGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCatga > 1:848268/1‑71 (MQ=255) cgacgaTGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCatga > 1:2847933/1‑71 (MQ=255) gacgaTGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCatga < 1:2108599/70‑1 (MQ=255) gCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGAtttt > 1:358330/1‑71 (MQ=255) gCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGAtttt > 1:4742047/1‑71 (MQ=255) gCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGAtttt > 1:2344276/1‑71 (MQ=255) ccAGGCGCGGGTCGAAGAAACGGCAGCCGGTGGTGCCGAGCACGCCGTAGAAGGCGTTCATGATGATCTTc < 1:3149026/71‑1 (MQ=255) ccAGGCGCGGGTCGAAGAAACGGCAGCCGGTGGTGCCGAGCACGCCGTAGAAGGCGTTCATGATGATCTTc < 1:3155193/71‑1 (MQ=255) ccAGGCGCGGGTCGAAGAAACGGCAGCCGGTGGTGCCGAGCACGCCGTAGAAGGCGTTCATGATGATCTTc < 1:4210221/71‑1 (MQ=255) ccAGGCGCGGGTCGAAGAAACGGCAGCCGGTGGTGCCGAGCACGCCGTAGAAGGCGTTCATGATGATCTTc < 1:4216314/71‑1 (MQ=255) ccAGGCGCGGGTCGAAGAAACGGCAGCCGGTGGTGCCGAGCACGCCGTAGAAGGCGTTCATGATGATCTTc < 1:2149633/71‑1 (MQ=255) gCCGCGGATCGAAGAAGCGTCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAgc > 1:2545034/1‑71 (MQ=255) gCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAgc > 1:3147449/1‑71 (MQ=255) gCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAgc > 1:2699352/1‑71 (MQ=255) cgGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCt < 1:4821529/71‑1 (MQ=255) cgGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCt < 1:2774116/71‑1 (MQ=255) cgGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCt < 1:2998960/71‑1 (MQ=255) gATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGc < 1:2332710/71‑1 (MQ=255) aTCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCat < 1:2889953/51‑1 (MQ=255) cGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGa > 1:1743065/1‑70 (MQ=255) cGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGa > 1:1225392/1‑70 (MQ=255) cGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGa > 1:4422257/1‑70 (MQ=255) cGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGa > 1:3991775/1‑70 (MQ=255) cGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTAATGATGATTTTCAGCGCCTGCGa > 1:3824803/1‑70 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:3820330/1‑52 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:4069394/1‑52 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:4431695/1‑52 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:1185120/1‑52 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:2297980/1‑52 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:2522947/1‑52 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:1553632/1‑52 (MQ=255) aagaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCAtgatga > 1:1290761/1‑52 (MQ=255) gaagCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCatgat < 1:252617/48‑1 (MQ=255) agCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGt > 1:381994/1‑71 (MQ=255) gCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATTATTTTCATCGCCt < 1:4741629/59‑1 (MQ=255) gCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGt < 1:2124368/71‑1 (MQ=255) cGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAg > 1:3415326/1‑46 (MQ=255) cGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAg > 1:3657449/1‑46 (MQ=255) cGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAg > 1:3792336/1‑46 (MQ=255) cGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAg > 1:3137110/1‑46 (MQ=255) cGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAg > 1:814777/1‑46 (MQ=255) cGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAg > 1:2733028/1‑46 (MQ=255) cGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAg > 1:101698/1‑46 (MQ=255) tgCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTTCGACAGCGGTTTGTTACCCTGGCGt < 1:615969/71‑1 (MQ=255) gCCGAGCACGCCGTAGAAGGCGTTCATGATTATCTTCAGCGCCTGCGa > 1:531144/1‑48 (MQ=255) gCCGAGCACGCCGTAGAAGGCGTTCATGATTATCTTCAGCGCCTGCGa > 1:922626/1‑48 (MQ=255) gCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCa > 1:2499409/1‑38 (MQ=255) cGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTg > 1:1223149/1‑71 (MQ=255) aGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGc < 1:4997668/71‑1 (MQ=255) cGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCa < 1:3058615/71‑1 (MQ=255) tAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGTCGTTTg < 1:670793/60‑1 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTa > 1:3349075/1‑46 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTAc > 1:3105215/1‑47 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGtt > 1:4124873/1‑56 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGtt > 1:319388/1‑56 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGtt > 1:3171794/1‑56 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGc > 1:2624123/1‑60 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGc > 1:2630115/1‑60 (MQ=255) aaaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGc > 1:1547859/1‑60 (MQ=255) aaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATcgcg < 1:5143955/68‑1 (MQ=255) aaGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCTccc < 1:2903264/71‑1 (MQ=255) cATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGc < 1:4586408/71‑1 (MQ=255) | TGGTGATCGACGATGCCAGCCGCGGATCGAAGAAGCGGCAGGCGGTGGTGCCGAGCACGCCATAAAAGGCATTCATGATGATTTTCAGCGCCTGCGACAGCGGTTTGTTACCCTGGCGTTTGGCTTCATCGCGCCCGTGC > Exported/61898‑62037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |