| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,403,006 | G→A | 11.1% | P283P (CCG→CCA) | rtn → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,403,006 | 0 | G | A | 11.1% | 201.4 / 12.1 | 72 | P283P (CCG→CCA) | rtn | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (26/38); new base A (3/5); total (29/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTATGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGTCGC > Exported/1402938‑1403074 | cgtaTGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCggt < 1:3627315/71‑1 (MQ=255)cgtaTGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCggt < 1:3317174/71‑1 (MQ=255)cgtaTGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCggt < 1:1096032/71‑1 (MQ=255)cgtaTGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCgg < 1:4977704/70‑1 (MQ=255) gtaTGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCggtg > 1:4174843/1‑71 (MQ=255) gtaTGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCggt < 1:4774477/70‑1 (MQ=255) taTGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCggt < 1:2191499/69‑1 (MQ=255) ccGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGgtggtg < 1:574574/65‑1 (MQ=255) cAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAg < 1:4253409/71‑1 (MQ=255) cAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAg < 1:2204794/71‑1 (MQ=255) cAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAg < 1:1534895/71‑1 (MQ=255) agaAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:3889773/71‑1 (MQ=255) agaAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:1054480/71‑1 (MQ=255) aaaTCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCttt > 1:495854/1‑70 (MQ=255) aTCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCg < 1:2995897/71‑1 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATa > 1:379091/1‑55 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATa > 1:2196589/1‑55 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATa > 1:4771263/1‑55 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATa > 1:4065317/1‑55 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATa > 1:1544569/1‑55 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATa > 1:5003617/1‑55 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATa > 1:1804350/1‑55 (MQ=255) aTGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGt < 1:3198088/71‑1 (MQ=255) tGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTa < 1:2791129/71‑1 (MQ=255) ccATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGt < 1:4314844/64‑1 (MQ=255) cAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTg > 1:4562942/1‑70 (MQ=255) cAAGCGCGAACAATTTTACGTGGCGTATCAACCGGAGGTGGATACACAAGCTTTGCGAGTAACGGGCCTg > 1:752035/1‑70 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCggt > 1:3430590/1‑35 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCggt > 1:3125379/1‑35 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCggt > 1:3688920/1‑35 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCggt > 1:5011282/1‑35 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCggt > 1:2983237/1‑35 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCggt > 1:2663261/1‑35 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCggt > 1:1603420/1‑35 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACaa > 1:1909634/1‑48 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACaa > 1:135425/1‑48 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACaa > 1:1451334/1‑48 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTgg < 1:3596213/70‑1 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTgg < 1:2175419/70‑1 (MQ=255) aaGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTgg < 1:4613217/70‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGt < 1:3199236/57‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGt < 1:849885/57‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGt < 1:4242453/57‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGt < 1:3268233/57‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTgg < 1:673048/68‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAg < 1:65606/71‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAg < 1:3562195/71‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAg < 1:1678117/71‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAg < 1:2207736/71‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAg < 1:4045224/71‑1 (MQ=255) gcgcGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAg > 1:2411341/1‑71 (MQ=255) gcgAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCg < 1:3556579/52‑1 (MQ=255) gAACAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGaa < 1:1310645/66‑1 (MQ=255) gAACAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGaa < 1:48263/66‑1 (MQ=255) gAACAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGaa < 1:1521023/66‑1 (MQ=255) gAACAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGaa < 1:3116252/66‑1 (MQ=255) gAACAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGaa < 1:2404783/66‑1 (MQ=255) aaCAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGa < 1:3225301/64‑1 (MQ=255) aaCAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGa < 1:1141801/64‑1 (MQ=255) aaCAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGa < 1:3231414/64‑1 (MQ=255) aaCAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGa < 1:2106127/64‑1 (MQ=255) aCAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGt > 1:1083832/1‑66 (MQ=255) aCAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGt > 1:4105026/1‑66 (MQ=255) aCAATTTTACGTGGCGTATCAACCAGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGt > 1:2093229/1‑66 (MQ=255) aaTTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTAATGCTa < 1:1362081/71‑1 (MQ=255) ttttCGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:1875356/39‑1 (MQ=255) tttACGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:1082781/39‑1 (MQ=255) tttACGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:1882995/39‑1 (MQ=255) tttACGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:1991374/39‑1 (MQ=255) tttACGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:2032159/39‑1 (MQ=255) tttACGTGGCGTATCAACCGGTGGTGGATACACAAGCtt < 1:4055014/39‑1 (MQ=255) ttACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCt > 1:2280601/1‑71 (MQ=255) ttACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCt > 1:2066571/1‑71 (MQ=255) ttACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCt > 1:4166317/1‑71 (MQ=255) aaCCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGTc > 1:1083942/1‑71 (MQ=255) aaCCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGTc > 1:3960750/1‑71 (MQ=255) tcGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGTcgc < 1:2416753/70‑1 (MQ=255) ccGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCt < 1:4244154/66‑1 (MQ=255) ccGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCt < 1:3347513/66‑1 (MQ=255) cGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGt > 1:2182327/1‑67 (MQ=255) cGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGt > 1:3330409/1‑67 (MQ=255) cGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGt > 1:4833148/1‑67 (MQ=255) cGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGt > 1:1623946/1‑67 (MQ=255) cGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGt > 1:3878200/1‑67 (MQ=255) cGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGt > 1:4026532/1‑67 (MQ=255) cGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGt > 1:391404/1‑67 (MQ=255) | CGTATGCGCCCCGGCAGAGAAATCATGACCGCCATCAAGCGCGAACAATTTTACGTGGCGTATCAACCGGTGGTGGATACACAAGCTTTGCGAGTAACGGGCCTGGAAGTACTGCTACGCTGGCGGCATCCTGTCGC > Exported/1402938‑1403074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |