| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,418,305 | T→C | 11.2% | I85T (ATC→ACC) | narP → | DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,418,305 | 0 | T | C | 11.2% | 218.0 / 15.8 | 80 | I85T (ATC→ACC) | narP | DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| Reads supporting (aligned to +/- strand): ref base T (47/24); new base C (2/7); total (49/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.39e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
ATGAAAGGTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTA > Exported/1418235‑1418368 | atGAAAGGTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATtattat > 1:4497981/1‑71 (MQ=255) aaaGGTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCt < 1:5116688/71‑1 (MQ=255) aaaGGTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCt > 1:4628661/1‑71 (MQ=255) ggTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGAc < 1:2605039/71‑1 (MQ=255) ggTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGAc < 1:3967373/71‑1 (MQ=255) ggTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGAc < 1:1828706/71‑1 (MQ=255) ggTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGAc < 1:1923025/71‑1 (MQ=255) ggTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGCATGGCGTTACCGCGCAAATTATTATCCTGAc < 1:3746923/71‑1 (MQ=255) gTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGAcc > 1:137935/1‑71 (MQ=255) gTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGAcc > 1:1927751/1‑71 (MQ=255) tGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGt < 1:403208/70‑1 (MQ=255) tGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTa < 1:3184520/71‑1 (MQ=255) tGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTa < 1:3462563/71‑1 (MQ=255) tGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTa < 1:1973073/71‑1 (MQ=255) tGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTa < 1:4767457/71‑1 (MQ=255) aGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGAc < 1:2437163/65‑1 (MQ=255) aGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATc > 1:1817803/1‑71 (MQ=255) aGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATc > 1:5027320/1‑71 (MQ=255) tGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATcc > 1:596514/1‑70 (MQ=255) tGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATcc > 1:4589129/1‑70 (MQ=255) gCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGAt > 1:2923897/1‑71 (MQ=255) gCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGAt > 1:1685789/1‑71 (MQ=255) gCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGAt > 1:2132930/1‑71 (MQ=255) tGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATcc < 1:685887/65‑1 (MQ=255) gATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTc > 1:857849/1‑71 (MQ=255) gATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGAAAATTATTATCCTGACCGTATCAGATGCCTc > 1:1901905/1‑71 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:3215103/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:321018/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:4755876/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:4323131/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:4913690/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:305954/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:1656527/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:1572219/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:650647/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:3157737/1‑48 (MQ=255) aCTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:242466/1‑48 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:3631557/1‑44 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:3435426/1‑44 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATc > 1:4369217/1‑44 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCg < 1:4329696/69‑1 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGa > 1:1253046/1‑70 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGa > 1:1378938/1‑70 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGAt > 1:2480882/1‑71 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGAt > 1:830631/1‑71 (MQ=255) tcAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGAt > 1:4299230/1‑71 (MQ=255) aaTGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGt > 1:4097362/1‑71 (MQ=255) gcgcAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTgc < 1:4845108/69‑1 (MQ=255) cAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGa < 1:3943508/71‑1 (MQ=255) gggATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa < 1:1406096/71‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTATCCTGACCGTATcc < 1:2552222/39‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTATCCTGACCGTATcc < 1:1056325/39‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTc < 1:3764226/47‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTc < 1:3919720/47‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTc < 1:3898179/47‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTc < 1:3714225/47‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTc < 1:2563898/47‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTc < 1:2569942/47‑1 (MQ=255) gATGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTc < 1:1179287/47‑1 (MQ=255) tGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACg < 1:2132597/71‑1 (MQ=255) tGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTCCa > 1:3873598/1‑47 (MQ=255) tGGCGTTACCGCGCAAATTATTACCCTGACCGTATCCGATGCCTCCa > 1:5139273/1‑47 (MQ=255) gCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACg > 1:944206/1‑69 (MQ=255) gCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACg > 1:3716159/1‑69 (MQ=255) gCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACg > 1:3523028/1‑69 (MQ=255) gCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCa < 1:4187874/71‑1 (MQ=255) gCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCa < 1:3206246/71‑1 (MQ=255) aCCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGgcg > 1:2274603/1‑70 (MQ=255) ccGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCa < 1:5087836/71‑1 (MQ=255) cgcAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGAc > 1:3192855/1‑71 (MQ=255) cAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACgg > 1:1891434/1‑71 (MQ=255) cAAATTATTATCCTGACCGTATCCGATGCCTACAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACgg > 1:4358/1‑71 (MQ=255) attattATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTa > 1:2826561/1‑71 (MQ=255) ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa > 1:4446710/1‑50 (MQ=255) ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa > 1:723691/1‑50 (MQ=255) ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa > 1:2421513/1‑50 (MQ=255) ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa > 1:2652166/1‑50 (MQ=255) ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa > 1:4737424/1‑50 (MQ=255) ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa > 1:4452882/1‑50 (MQ=255) ttattaTCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTa < 1:3479214/70‑1 (MQ=255) ttattaTCCTGACC‑TATCCGATGCCTCCAGCGATGTCTTTGCGCTGATa > 1:1541753/1‑49 (MQ=39) | ATGAAAGGTATGAGTGGCCTGGATACTCTCAATGCCTTGCGCAGGGATGGCGTTACCGCGCAAATTATTATCCTGACCGTATCCGATGCCTCCAGCGATGTCTTTGCGCTGATAGACGCAGGCGCAGACGGTTA > Exported/1418235‑1418368 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |