| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,488,632 | A→G | 8.5% | L132L (CTT→CTC) | nuoM ← | NADH:ubiquinone oxidoreductase, membrane subunit M |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,488,632 | 0 | A | G | 8.5% | 303.4 / 14.9 | 106 | L132L (CTT→CTC) | nuoM | NADH:ubiquinone oxidoreductase, membrane subunit M |
| Reads supporting (aligned to +/- strand): ref base A (75/22); new base G (4/5); total (79/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.50e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 129 total aligned reads displayed.
GCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGA > Exported/1488564‑1488702 | gCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAg > 1:2479932/1‑71 (MQ=255)gCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAg > 1:512961/1‑71 (MQ=255)gCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAg > 1:1504860/1‑71 (MQ=255)gCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATCTCGATGGCaa > 1:586680/1‑70 (MQ=255) cGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAgg < 1:459498/71‑1 (MQ=255) cGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAgg < 1:256404/71‑1 (MQ=255) cGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAgg < 1:475915/71‑1 (MQ=255) cGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAgg < 1:3128473/71‑1 (MQ=255) cGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAgg < 1:28379/71‑1 (MQ=255) cGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAg > 1:3484033/1‑70 (MQ=255) cGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAg > 1:4377024/1‑70 (MQ=255) aGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAac < 1:807021/69‑1 (MQ=255) gAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGc > 1:939224/1‑71 (MQ=255) gAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGc > 1:4651437/1‑71 (MQ=255) aTCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATaa > 1:915908/1‑70 (MQ=255) ggCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa > 1:557924/1‑52 (MQ=255) ggCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa > 1:1404243/1‑52 (MQ=255) ggCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa > 1:4193654/1‑52 (MQ=255) ggCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa > 1:2594878/1‑52 (MQ=255) ggCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa > 1:2387394/1‑52 (MQ=255) ggCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa > 1:1980481/1‑52 (MQ=255) ggCACCAGCATAATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa > 1:889507/1‑52 (MQ=255) aGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAgg < 1:1612682/48‑1 (MQ=255) aGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATaa > 1:1655390/1‑61 (MQ=255) aGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATaa > 1:2610378/1‑61 (MQ=255) aGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATaa > 1:2596952/1‑61 (MQ=255) aGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATaa > 1:3902023/1‑61 (MQ=255) tcatTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa < 1:4535873/42‑1 (MQ=255) tcatTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa < 1:3646950/42‑1 (MQ=255) tcatTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa < 1:386835/42‑1 (MQ=255) tcatTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa < 1:2052040/42‑1 (MQ=255) tcatTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa < 1:2029604/42‑1 (MQ=255) tcatTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCaa < 1:1820247/42‑1 (MQ=255) tcatTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCCATAACGCCGCCCAGGATc < 1:1945249/71‑1 (MQ=255) atTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATcc < 1:1659856/70‑1 (MQ=255) tttCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:3817036/1‑43 (MQ=255) tttCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:2259867/1‑43 (MQ=255) tttCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:1106048/1‑43 (MQ=255) tttCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:5043652/1‑43 (MQ=255) tttCCCAGAAGAAGAAGAACAGGAACAGGTCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCcac < 1:3030360/71‑1 (MQ=255) tCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGACCACGCCGAt > 1:1977549/1‑50 (MQ=255) tCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGAt > 1:4697120/1‑50 (MQ=255) tCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGAt > 1:3360913/1‑50 (MQ=255) tCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGAt > 1:2471089/1‑50 (MQ=255) tCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGAt > 1:830737/1‑50 (MQ=255) tCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGAt > 1:3097045/1‑50 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:1268529/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:3406577/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:3604671/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:3154163/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:866955/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:1131654/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:1030234/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:4183794/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:1376137/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:379403/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:4940564/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:4820636/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGaa > 1:2546231/1‑38 (MQ=255) cAGAAGAAGAAGAACAGGAACATGACGATGGCAAGGaa > 1:4650451/1‑38 (MQ=255) agaagaagaagaACAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg > 1:3551469/1‑71 (MQ=255) aagaagaagaaCAGGAACAGGTCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCca < 1:4091278/62‑1 (MQ=255) aagaagaagaaCAGGAACAGGTCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCca < 1:2768686/62‑1 (MQ=255) aagaagaagaaCAGGAACAGGTCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCca < 1:2188976/62‑1 (MQ=255) gaagaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATTCACATCAgg > 1:2747887/1‑64 (MQ=255) gaagaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg > 1:2982546/1‑64 (MQ=255) gaagaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg > 1:1752023/1‑64 (MQ=255) gaagaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg > 1:2136153/1‑64 (MQ=255) gaagaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg > 1:2887115/1‑64 (MQ=255) gaagaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGt > 1:2288601/1‑71 (MQ=255) aagaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAAcg < 1:1366484/42‑1 (MQ=255) agaaCAGGAACATGTCGATGGCAAGGAACACGCCGATAAcg < 1:2654791/41‑1 (MQ=255) aCATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCca > 1:3236265/1‑46 (MQ=255) aCATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATc > 1:2050930/1‑50 (MQ=255) aCATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATc > 1:1544512/1‑50 (MQ=255) aCATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCa > 1:4399548/1‑51 (MQ=255) aCATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCa > 1:1643898/1‑51 (MQ=255) aCATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCa > 1:495916/1‑51 (MQ=255) aCATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCa > 1:4016406/1‑51 (MQ=255) aTGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGTgg < 1:1334506/60‑1 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAgg > 1:1687650/1‑37 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAgg > 1:4587768/1‑37 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAgg > 1:166177/1‑37 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAgg > 1:1745620/1‑37 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAgg > 1:4543982/1‑37 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAgg > 1:293323/1‑37 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAgg > 1:1296419/1‑37 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg < 1:3997151/49‑1 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg < 1:1340821/49‑1 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg < 1:5114574/49‑1 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg < 1:1720408/49‑1 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg < 1:4022782/49‑1 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAg > 1:1523374/1‑54 (MQ=255) gTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAg > 1:4506119/1‑54 (MQ=255) tCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCCACAGCAGGTTCAGATGga > 1:4972047/1‑58 (MQ=255) tCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCCACAGCAGGTTCAGATGga > 1:4902287/1‑58 (MQ=255) tCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCCACAGCAGGTTCAGATGga > 1:3359346/1‑58 (MQ=255) tCGATGGCGAGGAACACGCCGATCACACCGCCCAGGATCCACAGCAGGTTCAGATGga > 1:1095425/1‑58 (MQ=255) tGGCAAGGAACACGCCGATAACGCCGCCCAGGATcc < 1:2641569/36‑1 (MQ=255) tGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAgg < 1:1258148/44‑1 (MQ=255) | GCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAGGAACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGA > Exported/1488564‑1488702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |