| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 20490 | NA (NA) | 5 (0.110) | 4/92 | NT | NA | coding (19/276 nt) | insA | IS1 repressor protein InsA |
| ? | AP009048 | = 279060 | NA (NA) | coding (40/276 nt) | insA | IS1 repressor protein InsA | |||||
AGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/20417‑20490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGT < AP009048/279060‑278992 AGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACA < 1:579616/71‑1 GATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAG < 1:506475/71‑1 GATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACA > 1:1462483/1‑70 TAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT < 1:989388/71‑1 TAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT > 1:4138038/1‑71 TAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT < 1:317567/71‑1 TAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT < 1:462050/71‑1 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT > 1:3011899/1‑70 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT > 1:2713333/1‑70 TGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGAC < 1:2998863/61‑1 GGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT < 1:4446159/54‑1 GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAG < 1:2799222/51‑1 GCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGC > 1:2535729/1‑50 CTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACA < 1:1410990/47‑1 TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACA < 1:473879/46‑1 TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGAC < 1:4062723/44‑1 TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT < 1:3656815/47‑1 ACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGC > 1:53630/1‑38 GTAGCTGAACAGGAGGGACAGCTACTGACTGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCG > 1:4293452/1‑70 AGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAAG > 1:4432824/1‑50 AGCTGAACAGGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAAAA > 1:2615399/1‑49 AGGAGGGACAGCTACTGACGGGGCGGTGCGTAACGGCAAAAGC > 1:3362136/1‑43 GGAGGGACAGCTACTGACGGGGTGGTGCGTAACGGCAA < 1:2431445/38‑1 CAGCTACTGACGGGGTTGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTG < 1:187667/70‑1 CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGC > 1:953131/1‑71 CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTG < 1:4397312/70‑1 CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTC > 1:3300900/1‑64 CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTATCACTGC > 1:2967488/1‑71 CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCA > 1:3933847/1‑49 CAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAC < 1:1497872/37‑1 AGCTACTGACGTGGTGGTGCGTAACGGCAAAAGCA > 1:3103073/1‑35 GCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCG > 1:1839072/1‑71 aTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCG > 1:497591/2‑70 CTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCG > 1:2799567/1‑70 CTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCT > 1:4373781/1‑62 TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGT > 1:125663/1‑70 TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGT > 1:131186/1‑70 TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTAT > 1:25327/1‑52 TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCT < 1:1720696/50‑1 TACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATC < 1:722202/44‑1 AGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/20417‑20490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGT < AP009048/279060‑278992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |