New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 224090NA (NA)4 (0.090) 3/92 NT NA noncoding (320/1542 nt) rrsH 16S ribosomal RNA
?AP009048 = 224102 NA (NA)noncoding (332/1542 nt) rrsH 16S ribosomal RNA

AGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/224016‑224090
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaCCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  AP009048/224102‑224033
                                                                                                                                                 
AGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACAC                                                                            >  1:3309391/1‑71
AGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACAC                                                                            >  1:4001947/1‑71
AGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACAC                                                                            >  1:1294206/1‑71
 GCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACAC                                                                            <  1:105743/70‑1
 GCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACT                                                                           >  1:4505081/1‑71
 GCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACAC                                                                            <  1:3584678/70‑1
  CTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          <  1:3452467/71‑1
  CTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          <  1:4351206/71‑1
   TAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          >  1:2122872/1‑70
   TAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          >  1:3780978/1‑70
   TAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          >  1:4053845/1‑70
   TAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          >  1:547433/1‑70
    AGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         >  1:2605190/1‑70
    AGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         >  1:1379928/1‑70
    AGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         >  1:1104146/1‑70
     GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGA                                                                        <  1:2584458/70‑1
     GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:2939477/69‑1
     GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:1223347/69‑1
     GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:2140624/69‑1
     GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:1617030/69‑1
     GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:1565868/69‑1
     GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:3509576/69‑1
       AGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACT                                                                           <  1:78037/65‑1
              GTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACT                                                                           <  1:1725795/58‑1
               TAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:1162380/59‑1
               TAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:914038/59‑1
                AACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGACCGTGTCTCAGT                                                            >  1:3186937/1‑71
                AACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          <  1:2367259/57‑1
                 ACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          <  1:4518395/56‑1
                   GGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:2773834/55‑1
                    GCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:1484872/54‑1
                     CTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTG                                                                          <  1:2960274/52‑1
                       CACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACAC                                                                            >  1:1946950/1‑48
                        ACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGACCGTGTCTCAGTTCCAGTGT                                                    >  1:3704710/1‑71
                        ACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGACCGTGTCTCAGTTCCAGT                                                      <  1:1484370/69‑1
                        ACCAAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGACCGTGTCTCAGTTCCAGTG                                                     <  1:1087446/70‑1
                         CCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGG                                                                         <  1:108835/49‑1
                         CCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACAC                                                                            <  1:4314331/46‑1
                                GACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGA                                                                        <  1:357935/43‑1
                                 ACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCCCACT                                                                           >  1:270107/1‑39
                                                                    attTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG        <  1:4535503/68‑1
                                                                      CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTC                 >  1:703483/1‑60
                                                                      CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAG                         >  1:1163994/1‑52
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGC     >  1:969995/1‑71
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGC     >  1:347231/1‑71
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGC     >  1:33640/1‑71
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGC     >  1:2291786/1‑71
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAG      >  1:3525476/1‑70
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG           >  1:1764823/1‑65
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTA            >  1:427274/1‑64
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGC               <  1:593958/61‑1
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTC                 >  1:896738/1‑59
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG                       <  1:698771/53‑1
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG                             <  1:3704469/47‑1
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCA                              >  1:948973/1‑46
                                                                       TGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC                                         <  1:165114/35‑1
                                                                        GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATTGTCGCCTAGGTGAGCC    >  1:2853545/1‑71
                                                                        GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCC    >  1:2503788/1‑71
                                                                        GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCC    >  1:4324505/1‑71
                                                                        GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC                                    <  1:3806599/39‑1
                                                                        GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT                                     <  1:436246/38‑1
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCG   >  1:835559/1‑71
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCG   >  1:1033241/1‑71
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCG   <  1:2419017/71‑1
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCC    <  1:3437750/70‑1
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCC    <  1:4135690/70‑1
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCC    >  1:1048937/1‑70
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAG      <  1:3774508/68‑1
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT         >  1:2475450/1‑65
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT         >  1:706308/1‑65
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCG                   <  1:3323934/55‑1
                                                                         GACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT                                     >  1:2891926/1‑37
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTATGTGAGCCGT  <  1:2801035/71‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  1:3712844/71‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  1:3708549/71‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  1:1180983/71‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  1:1530370/71‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  1:2375594/71‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  1:4261795/71‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG        <  1:3777999/65‑1
                                                                          ACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT                           >  1:1792565/1‑46
                                                                                                                                                 
AGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/224016‑224090
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaCCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGT  <  AP009048/224102‑224033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.