| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 314744 | NA (NA) | 4 (0.090) | 3/88 | NT | NA | coding (239/309 nt) | insE | IS3 element protein |
| ? | AP009048 | = 314761 | NA (NA) | coding (256/309 nt) | insE | IS3 element protein | |||||
Only 100 of 155 total aligned reads displayed.
AAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/314668‑314744‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagctCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < AP009048/314761‑314693 AAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACG > 1:889571/1‑71AAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACG > 1:209834/1‑71AAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACG > 1:1262314/1‑71AAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACG > 1:4305746/1‑71 AACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC < 1:2319688/71‑1 AACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:3776837/1‑71 AACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:137367/1‑71 AACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:1277279/1‑71 AACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:1091541/1‑71 AACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACG < 1:1810261/70‑1 ACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:1295784/1‑70 ACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:3893059/1‑70 CAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCA < 1:1711719/71‑1 CAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:480824/1‑69 CAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:1988166/1‑69 CAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:3040568/1‑69 CAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:3950243/1‑69 AGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCCCGTCTCAAACGCCAG > 1:2748120/1‑71 AGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAG < 1:4039507/71‑1 GCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGC < 1:422942/71‑1 GCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC < 1:3700620/67‑1 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGTAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT > 1:1996400/1‑71 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT > 1:2186028/1‑71 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT < 1:2553778/71‑1 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT > 1:2509961/1‑71 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT > 1:2437129/1‑71 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT < 1:3177239/71‑1 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT > 1:606911/1‑71 CAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC < 1:679537/66‑1 AAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT < 1:3514979/70‑1 AAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT < 1:3906258/70‑1 AAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC < 1:1594727/65‑1 ATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGC > 1:1433565/1‑66 ATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCC > 1:2043920/1‑63 TCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTC‑ACCGAGATTGCACGTCTCAAACGCCAGC > 1:2924338/1‑64 ACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTCTTCATCCCGTT > 1:2826340/1‑71 GTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCA > 1:3908039/1‑54 CTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGC > 1:2514029/1‑54 TTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACG > 1:2820210/1‑48 CTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTCTTCATCCCGTTCTGCC < 1:2604258/69‑1 AACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTCTTCATCCCGTTCTGCCAGCTG < 1:2016778/71‑1 AACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT > 1:3896485/1‑49 GAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT < 1:584860/44‑1 GAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGC > 1:4163044/1‑39 ACTGGAGATGTCTACCGAGATTGCACGTCTCAAACG < 1:2254714/36‑1 GGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT > 1:1976641/1‑39 GCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACG < 1:1483140/71‑1 GCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCAC < 1:3022160/70‑1 GCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCA < 1:2624191/45‑1 GCCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGA > 1:3172102/1‑39 ccgGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGT > 1:1976510/4‑71 CCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAG < 1:3364204/64‑1 CCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCA < 1:2682627/63‑1 CCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAG < 1:3771092/54‑1 CCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCT < 1:4461538/48‑1 CCAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCT < 1:2840908/48‑1 CAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT < 1:1803880/71‑1 CAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:3545417/1‑71 CAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT < 1:522307/71‑1 CAGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGT < 1:3564777/70‑1 AGCTCTTCATCGCGTTCTGCCTGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT < 1:4366013/70‑1 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTC < 1:1787399/71‑1 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:1330689/1‑70 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:1980182/1‑70 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:2893120/1‑70 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:4352073/1‑70 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:4458911/1‑70 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:783132/1‑70 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGT > 1:1059911/1‑63 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCG > 1:826501/1‑48 AGCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCA > 1:2115440/1‑42 AGCTCTTCATCCCGTTCTGACAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGT > 1:3006685/1‑69 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCA < 1:1850160/71‑1 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCA < 1:688821/71‑1 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCA < 1:2769930/71‑1 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT < 1:2218914/69‑1 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:1090639/1‑69 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:3457156/1‑69 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:2701688/1‑69 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCT < 1:1292037/45‑1 GCTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGA > 1:3181470/1‑35 GCTCTTCAACCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCT > 1:223539/1‑57 aTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:3837288/2‑68 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:3063344/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:1376587/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:1383508/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:1850957/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:1501717/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:1323248/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:3496515/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:2537541/71‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:3516173/1‑68 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTT > 1:1037375/1‑68 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCAC < 1:3372998/65‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAG < 1:4209967/50‑1 CTCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCG < 1:642361/46‑1 TCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:3872888/70‑1 TCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < 1:140019/70‑1 TCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGAAGTGCAATCT < 1:2177416/43‑1 TCTACATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG > 1:4077902/1‑70 AAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/314668‑314744‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagctCTTCATCCCGTTCTGCCAGCTGGCGTTTGAGACGTGCAATCTCGGTAGACATCTCCAGTTCACGTTCAG < AP009048/314761‑314693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |