New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 380919NA (NA)3 (0.070) 3/94 NT NA coding (390/411 nt)
coding (22/906 nt)
insC
insD
IS2 insertion element repressor InsA
IS2 insertion element transposase InsAB'
?AP009048 = 380937 NA (NA)coding (408/411 nt)
coding (40/906 nt)
insC
insD
IS2 insertion element repressor InsA
IS2 insertion element transposase InsAB'

CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/380846‑380919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaCTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT  <  AP009048/380937‑380868
                                                                                                                                                
CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC                                                                           >  1:4184704/1‑71
CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC                                                                           >  1:3959469/1‑71
CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC                                                                           >  1:36280/1‑71
 GATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT                                                                          <  1:645375/71‑1
 GATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT                                                                          <  1:87111/71‑1
  ATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT                                                                          >  1:580883/1‑70
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:3323657/1‑71
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        <  1:614696/71‑1
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:4410154/1‑71
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:4335234/1‑71
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:863663/1‑71
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        <  1:3352378/71‑1
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:3216336/1‑71
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:1955405/1‑71
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        <  1:2274532/71‑1
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT                                                                         <  1:3662482/70‑1
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT                                                                         <  1:4301981/70‑1
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT                                                                         <  1:1638327/70‑1
   TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT                                                                         <  1:4393122/70‑1
           GAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:943575/1‑63
            AACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        <  1:1581150/62‑1
             ACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        <  1:2029570/61‑1
                   CAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:2485097/1‑55
                   CAAAGAAGCCGTTGAATATGGACAGGCAAAAAAGTGGATAGCGCACGCGCCC                                                                           >  1:2333066/1‑52
                    AAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC                                                                           >  1:3286463/1‑51
                      AGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTACTCCCCATCCCCGGGCAAT                                                     <  1:3422597/71‑1
                            CGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTACTCCCCATCCCCGGGCAATAAGGGC                                               <  1:3656334/71‑1
                             GTTGAATATGGACGGGCAAAAAAGTGGATAGGGCACGCGCCCTTA                                                                        >  1:1475079/1‑45
                              TTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT                                                                         <  1:2056169/43‑1
                              TTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT                                                                          <  1:1670289/42‑1
                               TGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT                                                                         >  1:2258095/1‑42
                               TGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTT                                                                         <  1:4418098/42‑1
                                GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:4589471/1‑42
                                GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:3778854/1‑42
                                GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA                                                                        >  1:250323/1‑42
                                GAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCT                                                                          <  1:2167572/40‑1
                                   TATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCC                                                                           >  1:864877/1‑36
                                                AAAAGTGGATAGCGCACGCGCCCTTACTCCCCATCCCCGGGCAAT                                                     >  1:4452673/1‑45
                                                                      CTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCT     <  1:4303738/71‑1
                                                                      CTTACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGC      >  1:2866388/1‑70
                                                                        TACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC   >  1:4482523/1‑71
                                                                        TACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC   >  1:1045061/1‑71
                                                                        TACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCC                       >  1:2734772/1‑51
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCTACTTTTTTGCCCGTCCATATTCAAC         >  1:291884/1‑64
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCTATATTCAACGGCTTCT  >  1:2603872/1‑71
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT  >  1:985098/1‑71
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT  >  1:3788765/1‑71
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT  >  1:3783443/1‑71
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT  >  1:1953592/1‑71
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC   >  1:4110569/1‑70
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC   <  1:2588800/70‑1
                                                                         ACTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTT                          <  1:1225881/47‑1
                                                                                                                                                
CGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/380846‑380919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttaCTCCCCATCCCCGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCT  <  AP009048/380937‑380868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.