| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2191937 | 61 (1.220) | 4 (0.090) | 3/90 | NT | 6.5% | coding (2308/2481 nt) | yehB | predicted outer membrane protein |
| ? | AP009048 | = 2191956 | 61 (1.380) | coding (2289/2481 nt) | yehB | predicted outer membrane protein | |||||
GCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2191862‑2191937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcattAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCAGTT < AP009048/2191956‑2191888 GCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATA > 1:2387418/1‑71 GGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATC < 1:3361803/71‑1 GTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCA > 1:777592/1‑71 GTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCA > 1:3063561/1‑71 CTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATT > 1:2574032/1‑70 CTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATT > 1:2579227/1‑70 TCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCA < 1:3729741/66‑1 CATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCA > 1:463417/1‑65 AATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATT < 1:3480397/53‑1 TAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATTAACGTTTGGTTATGAAGTC > 1:4305911/1‑70 TAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATTAACGTTTGGTTATGAAGTC > 1:248138/1‑70 AACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCA < 1:1447854/48‑1 CTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCA > 1:1407433/1‑46 CTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCA > 1:2990819/1‑46 CTGGCCGACAACGCCAATATTATGACCATGGATATCATT > 1:515752/1‑39 CAATATTATGACCATGGATATCATTAACGTTTGGTTATGAA < 1:4529996/41‑1 AATATTATGACCATGGATATCATTAACGTTTGGTTATGAAGTCAAT > 1:4100447/1‑46 ATCATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTC < 1:726319/71‑1 TCATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCA < 1:2024071/71‑1 CATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCAG > 1:3929314/1‑71 CATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCAG > 1:1732071/1‑71 ATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCAGT < 1:610512/71‑1 ATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCAG < 1:667194/70‑1 ATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTT < 1:314949/52‑1 ATTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATT > 1:3295621/1‑46 TTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCAGTT < 1:1998084/71‑1 TTAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTG < 1:277741/46‑1 TAACGTTTGGTTATGAAGTCAATGATATGCATGGTCATAATATTGGCGTTGTCGGCCAGGGAA < 1:1222242/63‑1 GCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2191862‑2191937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcattAACGTTTGGTTATGAAGTCAATGATATCCATGGTCATAATATTGGCGTTGTCGGCCAGGGAAGTCAGTT < AP009048/2191956‑2191888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |