| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2728290 | 0 (0.000) | 3 (0.070) | 3/92 | NT | 100% | noncoding (1524/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | AP009048 | = 2728302 | NA (NA) | noncoding (1512/1542 nt) | rrsG | 16S ribosomal RNA | |||||
TTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2728218‑2728290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT < AP009048/2728302‑2728233 TTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAAC > 1:3548020/1‑71TTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAAC > 1:1337994/1‑71 TCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAAC > 1:1257540/1‑70 TCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA < 1:4034539/69‑1 TCACTTTTCATCAGACAATCTGTGTGAGCACTGAAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACC > 1:1799724/1‑71 CACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG > 1:4360207/1‑71 ACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACTCTTCTTTAAGGTAAGGAGGTGATCCAACCG > 1:2098559/1‑70 ACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG > 1:4343965/1‑70 ACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:1356543/1‑67 TTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACC < 1:627549/66‑1 AGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCT > 1:159239/1‑71 GACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCA < 1:3257634/55‑1 ACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:1738100/1‑55 CAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAAC > 1:4137579/1‑55 CAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:2342204/1‑54 GTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAAC > 1:2657102/1‑49 TGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA < 1:2788706/47‑1 TGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCA < 1:1188055/44‑1 TGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGCTGATCCAA > 1:4404260/1‑45 CTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCA < 1:527060/38‑1 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAAC > 1:2936641/1‑37 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:2324177/1‑36 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:4218841/1‑36 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:1364364/1‑36 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:3841808/1‑36 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:3370058/1‑36 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA > 1:1705224/1‑36 CAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCA < 1:812935/35‑1 CGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTTGG > 1:1614640/1‑51 GGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGG > 1:620408/1‑36 ttACCGTAGGGGAACCTGCGGTTGGAGCACCTCCTTACCTTAAAGAAGCGTACTT < 1:105881/53‑1 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACA > 1:2897645/1‑67 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACA > 1:1251066/1‑67 AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAG < 1:2048216/44‑1 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGAT > 1:3131464/1‑71 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGAT > 1:2914611/1‑71 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGAT > 1:4476615/1‑71 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCAC < 1:1988881/65‑1 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCG < 1:2056641/48‑1 ACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAG < 1:3497325/43‑1 CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATT < 1:3534121/71‑1 CCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATT < 1:4001241/71‑1 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTG > 1:4469391/1‑71 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTG < 1:2454/71‑1 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTG < 1:11212/53‑1 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTG < 1:3226658/53‑1 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGC > 1:1624381/1‑45 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGC > 1:1294119/1‑45 CGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAA > 1:4501514/1‑43 GTAGGGGAACCTGCGGTTGGCTCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTG > 1:2579480/1‑70 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT < 1:2443763/71‑1 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT < 1:1871986/71‑1 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCA > 1:2623552/1‑61 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAG > 1:892549/1‑55 GTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAG > 1:39689/1‑40 TTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2728218‑2728290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGT < AP009048/2728302‑2728233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |