| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2926734 | 38 (0.760) | 5 (0.120) | 4/88 | NT | 12.9% | intergenic (+406/‑151) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter |
| ? | AP009048 | = 2926743 | 35 (0.810) | intergenic (+415/‑142) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter | |||||
GTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2926672‑2926734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatacaCACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTA < AP009048/2926743‑2926679 GTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGTT < 1:3485553/71‑1 GGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAG < 1:1472555/54‑1 ATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAG < 1:1752954/52‑1 TAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGTTATGTAT < 1:411768/70‑1 AATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACACACAAGTTA > 1:3076144/1‑64 CTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAG < 1:57281/47‑1 TCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATTGATACA < 1:1193876/46‑1 CCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATAC < 1:618857/44‑1 TGAGATCAAGATCACTGATAGATACACACAAGTTATGTATC > 1:1435940/1‑41 TGAGATCAAGATCACTGATAGATACACACAAGTTATGTATC > 1:340075/1‑41 AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATT < 1:3940798/71‑1 AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATT < 1:53692/71‑1 AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATT < 1:1551412/71‑1 AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAA > 1:1762482/1‑44 GATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTA < 1:3743984/71‑1 ATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTAC < 1:3973374/55‑1 ACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACA < 1:9659/42‑1 GTTGGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2926672‑2926734‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatacaCACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTACTTGGAAGATAGATTA < AP009048/2926743‑2926679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |