| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3589856 = | 40 (0.800) | 3 (0.070) | 3/86 | NT | 8.9% | intergenic (‑141/‑223) | polA/yihG | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease/predicted endonuclease |
| ? | AP009048 | 3589885 = | 28 (0.660) | intergenic (‑170/‑194) | polA/yihG | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease/predicted endonuclease | |||||
AACTGCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3589932‑3589856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatttatTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAATAAATCCATCCCTAA > AP009048/3589885‑3589952 AACTGCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAAT < 1:4018864/70‑1AACTGCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAAT > 1:453268/1‑70 GCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATT > 1:4138627/1‑70 CATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTA > 1:4096290/1‑71 CATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTA > 1:4178769/1‑71 CATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATT < 1:1394262/69‑1 CATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATT < 1:4150411/69‑1 ATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTAT > 1:1697101/1‑71 ATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAAT < 1:1952321/67‑1 TGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTT < 1:2581035/68‑1 CAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTAT < 1:928459/63‑1 AAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAA > 1:1378565/1‑56 AAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATT > 1:899336/1‑53 TAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATT < 1:4434664/40‑1 TAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATT < 1:3212298/40‑1 TAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATT < 1:2511151/40‑1 AAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTAT > 1:942222/1‑41 TAATAAATTAAAAGCGATGTAAATAATTTATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTT > 1:2562818/1‑70 AAAAGCGATGTAAATAATTTATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTT < 1:815386/70‑1 AGCGATGTAAATAATTTATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTC > 1:4353951/1‑59 TAATTTATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAATAAATCCAT < 1:3259763/70‑1 ATTTATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAAT < 1:2636851/60‑1 TTTATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTT < 1:3378177/44‑1 TATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAATAAATCCATCCCTAA > 1:860783/1‑71 TATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAATAAATCCATCACTAA > 1:2368625/1‑71 gTTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAATAAATCCATCCCTAA > 1:2932400/2‑70 ATTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAATAAATCCATCGCTAA > 1:2932398/1‑70 AACTGCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3589932‑3589856‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatttatTATCATGCTTTTTACAGCATGATGTTTGTCTTTGTTTTTCATGCAGTTAAAAATAAATCCATCCCTAA > AP009048/3589885‑3589952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |