| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4080177 = | 92 (1.840) | 2 (0.050) | 3/88 | NT | 2.7% | coding (368/759 nt) | glpR | DNA‑binding transcriptional repressor |
| ? | AP009048 | 4080198 = | 64 (1.480) | coding (389/759 nt) | glpR | DNA‑binding transcriptional repressor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGGCTGCGTAATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4080250‑4080177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttgaTGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCATTG > AP009048/4080198‑4080266 GCGGCTGCGTAATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGT > 1:4611150/1‑71GCGGCTGCGTAATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGT > 1:1327624/1‑71 CGGCTGCGTAATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGTT < 1:1214412/71‑1 GCTGCGTAATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGTTGA < 1:3976681/71‑1 TAATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTTGCTAAC‑ACGTTGATGGTA < 1:3511374/70‑1 ATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACGTTGCTAAC‑ACGTTGATGGTAAA < 1:3533121/70‑1 TTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGTT < 1:202846/60‑1 CCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGTTG < 1:2906373/57‑1 CCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGT < 1:4251704/55‑1 CGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAAC < 1:3169269/49‑1 TCAACG‑TGTTAGCAACGTTGATGGTAAAAGAAGATTTTC < 1:1027808/39‑1 GTTGATGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCA > 1:1515976/1‑71 GTTGATGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCA > 1:1223954/1‑71 TTGATGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGT < 1:120320/39‑1 TTGATGGTAAAAGAAGATTTTCGCATCATTCTCGCC < 1:4263574/36‑1 GATGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCATTG > 1:1830759/1‑71 GATGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCATT < 1:1800385/70‑1 GATGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCATT < 1:2300367/70‑1 GATGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCATT < 1:1548479/70‑1 GCGGCTGCGTAATTCGCCACCGGCGAGAATGATGCGAAAATCTTCTTTTACCATCAACG‑TGTTAGCAACGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4080250‑4080177‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttgaTGGTAAAAGAAGATTTTCGCATCATTCTCGCCGGTGGCGAATTACGCAGCCGCGATGGCGGGATCATTG > AP009048/4080198‑4080266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |