| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1209367 = | 15 (0.300) | 26 (0.760) | 22/70 | NT | 75.0% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | 1211196 = | 7 (0.200) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 114 total aligned reads displayed.
CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGC > AP009048/1209297‑1209433 | cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:3936561‑M1/1‑71 (MQ=255)cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:3120924‑M1/1‑71 (MQ=255) gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG > 1:3056721‑M1/1‑71 (MQ=255) atgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg < 1:2733998‑M1/3‑1 (MQ=255) atgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg < 1:3568417‑M1/3‑1 (MQ=255) ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGG < 1:2740189‑M1/71‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt > 1:3302697‑M1/66‑71 (MQ=255) gCCGCAAGAATCCGTTTGGC‑ATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 1:2701869‑M1/71‑1 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt > 1:41606‑M1/64‑70 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:1439251‑M1/8‑1 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:3478793‑M1/63‑71 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:4280436‑M1/63‑70 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga > 1:3009756‑M1/61‑71 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:4458437‑M1/9‑1 (MQ=255) cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:556075‑M1/71‑1 (MQ=255) cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:1425627‑M1/71‑1 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:3800841‑M1/59‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA < 1:1249663‑M1/71‑1 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA < 1:2540218‑M1/71‑1 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG > 1:1082561‑M1/1‑66 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG > 1:3011210‑M1/1‑66 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:2836753‑M1/16‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga > 1:3937199‑M1/55‑67 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:754242‑M1/70‑1 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag < 1:948608‑M1/12‑1 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:1860723‑M1/18‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttgattttcataaacgTTGGTTTGGGAGAAgg < 1:4104522‑M1/16‑1 (MQ=255) ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc > 1:682437‑M1/1‑68 (MQ=255) ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc > 1:3864788‑M1/1‑68 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:1765838/71‑1 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:4491579/71‑1 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:2999595/71‑1 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:825630‑M1/71‑7 (MQ=255) tttGGCGATATAAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa < 1:3443445/70‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa < 1:3532704‑M1/21‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:3547324‑M1/50‑70 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:2708326‑M1/50‑70 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa < 1:2210159‑M1/21‑1 (MQ=255) aagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa > 1:3348308‑M1/49‑65 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat < 1:655554‑M1/70‑9 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga < 1:2721306‑M1/11‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt < 1:523799‑M1/25‑1 (MQ=255) aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc < 1:134785‑M1/26‑1 (MQ=255) aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:3904032‑M1/45‑70 (MQ=255) gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:4514445‑M1/43‑54 (MQ=255) gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt > 1:1803810‑M1/43‑71 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct < 1:3778663‑M1/71‑14 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg > 1:194466‑M1/1‑57 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:4533439/1‑71 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:843296‑M1/42‑71 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga < 1:4252150‑M1/13‑1 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc > 1:2419899‑M1/41‑71 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA > 1:2416358‑M1/1‑53 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa > 1:3786836/1‑65 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:1605137‑M1/53‑1 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgaga > 1:538571‑M1/37‑49 (MQ=255) aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtg < 1:2424059‑M1/71‑21 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt > 1:2274415‑M1/1‑50 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc > 1:3207901/1‑71 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:2964193‑M1/49‑1 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:3343387‑M1/49‑1 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta > 1:2055616‑M1/1‑48 (MQ=255) atttgcttttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 1:630491‑M1/32‑66 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTg < 1:2386575‑M1/8‑1 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggtt < 1:2212546‑M1/71‑29 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:3966803‑M1/44‑1 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:2049077‑M1/27‑38 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt < 1:646697‑M1/61‑20 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt > 1:1190049/1‑70 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:1735553‑M1/25‑51 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:3743408‑M1/45‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg < 1:3006181‑M1/71‑32 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:3026711‑M1/47‑1 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:272418‑M1/48‑1 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:3145990‑M1/48‑1 (MQ=255) tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:1077127‑M1/48‑1 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:1440544/57‑1 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:3183394‑M1/36‑1 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:1875024‑M1/15‑1 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:3433901‑M1/50‑1 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt > 1:360311/1‑48 (MQ=255) aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:3636712/58‑1 (MQ=255) cttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa < 1:3198596‑M1/27‑1 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:625958/1‑71 (MQ=255) aCGGATCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc < 1:3598600‑M1/71‑40 (MQ=255) aCGGATCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttc < 1:3593122‑M1/71‑40 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:4042684‑M1/28‑1 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca > 1:2456622‑M1/14‑45 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:1841981‑M1/58‑1 (MQ=255) ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt < 1:2561336/71‑1 (MQ=255) ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt < 1:1915719/71‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:701229‑M1/61‑1 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGcgctgcattacctgt < 1:3374355‑M1/41‑16 (MQ=255) tcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:4441848‑M1/32‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg > 1:3523856‑M1/1‑25 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:3846395‑M1/41‑17 (MQ=255) aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg > 1:3220284/1‑71 (MQ=255) aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg > 1:2759466/1‑71 (MQ=255) aacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:904277‑M1/67‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:4001002‑M1/71‑52 (MQ=255) | CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGC > AP009048/1209297‑1209433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |