| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2028009 = | 56 (1.120) | 3 (0.060) | 3/96 | NT | 5.8% | coding (362/816 nt) | yedP | conserved hypothetical protein |
| ? | AP009048 | 2028031 = | 45 (0.960) | coding (384/816 nt) | yedP | conserved hypothetical protein | |||||
GCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAG > AP009048/2027940‑2028079 | gCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTc < 1:3250163/71‑1 (MQ=255)gCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTc > 1:302574/1‑71 (MQ=255)gCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTc < 1:2966320/71‑1 (MQ=255) agattagcgttaccgacgcctcatgaagctgcgtcagcgccgcctggctacggcttaatcccgtccatTcg > 1:4552470‑M1/69‑71 (MQ=255) aaaTCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTcgac < 1:3996292/71‑1 (MQ=255) aaaTCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTcgac < 1:2856307/71‑1 (MQ=255) aGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGc < 1:1159486/71‑1 (MQ=255) tGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTcgacga > 1:976175/1‑64 (MQ=255) ggTTTTAAATACGCTACGCGAGAAATAACATTTTAAATTCACGACTTTTGATGATGTCGACGAt < 1:3139853/64‑1 (MQ=255) gTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAAcc < 1:4609686/69‑1 (MQ=255) gTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCa < 1:3037339/70‑1 (MQ=255) ttttAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAAc < 1:4496153/67‑1 (MQ=255) ttAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCg > 1:2148209/1‑70 (MQ=255) ttAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGc > 1:1426215/1‑71 (MQ=255) tAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGcc > 1:1854025/1‑71 (MQ=255) tAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGc > 1:1692147/1‑70 (MQ=255) aaaTACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCAt > 1:396387/1‑66 (MQ=255) atgaagctgcgtcagcgccgcctggctacggcttaatcccgtccatTCGACGATGCAACCATCGCCGaa > 1:3739990‑M1/47‑69 (MQ=255) acgctacgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATg > 1:3361556/1‑71 (MQ=255) cgctacgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGaa > 1:1841463/1‑68 (MQ=255) cgctacgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATg > 1:4470859/1‑70 (MQ=255) cgctacgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATg < 1:3175988/70‑1 (MQ=255) cgctacgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATg > 1:4293021/1‑70 (MQ=255) gctgcgtcagcgccgcctggctacggcttaatcccgtccatTCGACGATGCAACCATCGCCGa < 1:349456‑M1/22‑1 (MQ=255) cgcgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCAt > 1:1963180/1‑56 (MQ=255) cgcgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACgg < 1:4156083/70‑1 (MQ=255) cgcgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACgg < 1:4351096/70‑1 (MQ=255) gcgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACg < 1:4372251/68‑1 (MQ=255) gcgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGa < 1:1298157/71‑1 (MQ=255) cgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCAt > 1:2164927/1‑54 (MQ=255) cgAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCAt > 1:4296753/1‑54 (MQ=255) agaaagaaCATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCg < 1:245979/57‑1 (MQ=255) gaaagaaCATTTTAAATTCACGACTTTTGATGATGt < 1:1227460/36‑1 (MQ=255) gaaagaaCATTTTAAATTCACGACTTTTGATGATGt < 1:3938630/36‑1 (MQ=255) aaagaaGATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAg > 1:598578/1‑71 (MQ=255) agaaCATTTTAAATTCACGACTTTTGATGATGTCGACGATg > 1:3996487/1‑41 (MQ=255) gaaCATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCg > 1:1878502/1‑71 (MQ=255) gaaCATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCg < 1:2987075/71‑1 (MQ=255) aCATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGc > 1:1252622/1‑48 (MQ=255) gcctggctacggcttaatcccgtccatTAGACGATGCAACCATCGc < 1:2245095‑M1/19‑1 (MQ=255) aTTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAg < 1:3279181/70‑1 (MQ=255) ttttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGAc < 1:1420312/54‑1 (MQ=255) ttttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGcc < 1:4205786/71‑1 (MQ=255) ttttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGc > 1:912566/1‑70 (MQ=255) tttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTaa < 1:1572676/61‑1 (MQ=255) ttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATc > 1:2305378/1‑41 (MQ=255) ttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAg > 1:2562346/1‑71 (MQ=255) ttAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAg > 1:1941948/1‑71 (MQ=255) aaaTTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAggc > 1:1485028/1‑71 (MQ=255) aaaTTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAgg < 1:1236239/70‑1 (MQ=255) aaTTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAggcg < 1:615286/71‑1 (MQ=255) ttCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAg > 1:1747618/1‑62 (MQ=255) tCACGACTTTTGATGATGTCGACGATGCAACCATc > 1:1350751/1‑35 (MQ=255) cACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGgcggcg < 1:3226769/70‑1 (MQ=255) cACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGgcgc > 1:4107119/1‑71 (MQ=255) aCGACTTTTGATGATGTCGACTATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCt < 1:2426224/71‑1 (MQ=255) aCGACTTTTGATGATGTCGACGATGCAACCATCGcc < 1:1561273/36‑1 (MQ=255) aCGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGcc > 1:1915128/1‑61 (MQ=255) aCGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCt > 1:1405802/1‑71 (MQ=255) gACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGcc > 1:1956920/1‑53 (MQ=255) cTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACg < 1:1819224/71‑1 (MQ=255) cTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACg > 1:1103034/1‑71 (MQ=255) tttGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACg > 1:1413984/1‑69 (MQ=255) ttGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGAc > 1:2510407/1‑67 (MQ=255) ttGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGc < 1:1276437/69‑1 (MQ=255) tgatgaTGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGc > 1:3223974/1‑71 (MQ=255) atgatgTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCtt < 1:2439809/71‑1 (MQ=255) tgatgTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCtt > 1:2697267/1‑70 (MQ=255) tgatgTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTc < 1:152329/71‑1 (MQ=255) tgTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATg < 1:1559780/71‑1 (MQ=255) gTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCAt > 1:757798/1‑69 (MQ=255) TCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAg > 1:4385110‑M1/1‑71 (MQ=255) | GCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAG > AP009048/2027940‑2028079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |