| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3389452 = | 49 (0.980) | 3 (0.060) | 3/98 | NT | 5.5% | coding (78/930 nt) | aaeR | predicted DNA‑binding transcriptional regulator, efflux system |
| ? | AP009048 | 3389477 = | 57 (1.190) | coding (103/930 nt) | aaeR | predicted DNA‑binding transcriptional regulator, efflux system | |||||
GACTAAAACGCATGTCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTT > AP009048/3389382‑3389520 | ggccaatgctgcgtgtgctacggtttaacagctttacctgcaactcatcttccagttttgataccgtctga > 1:4455144‑M1/71‑71 (MQ=255) cTAAAACGCATGTCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTa > 1:3321339/1‑69 (MQ=255) cTAAAACGCATGTCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACa < 1:2884225/71‑1 (MQ=255) aCGCATGTCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGAt > 1:2421095/1‑69 (MQ=255) gCATGTCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGc > 1:4119605/1‑71 (MQ=255) ggTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCg < 1:737981/70‑1 (MQ=255) ggTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCg < 1:732848/70‑1 (MQ=255) ggTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGt < 1:4263668/71‑1 (MQ=255) ggTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGt < 1:2673146/71‑1 (MQ=255) tttGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAg > 1:2079857/1‑54 (MQ=255) tttGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGttt > 1:4602842/1‑64 (MQ=255) ccAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCAtcag < 1:2198618/70‑1 (MQ=255) acagctttacctgcaactcatcttccagttttgataccgtctgACTGATGAGCGTTTCGTCCAtcagtcag > 1:2920044‑M1/44‑71 (MQ=255) aaGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGt > 1:3996158/1‑60 (MQ=255) aaGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCAtcagt > 1:1048086/1‑68 (MQ=255) agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGa < 1:1275869/71‑1 (MQ=255) agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGa > 1:4300757/1‑71 (MQ=255) agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGa > 1:1380860/1‑71 (MQ=255) gAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTAt > 1:636236/1‑70 (MQ=255) gAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTAt > 1:2332536/1‑70 (MQ=255) aaTTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATg > 1:149417/1‑41 (MQ=255) aTTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCAtcagtca > 1:371040/1‑60 (MQ=255) aTTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaa < 1:4059723/71‑1 (MQ=255) tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGa > 1:1901593/1‑37 (MQ=255) tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaa < 1:2236236/71‑1 (MQ=255) tgcaactcatcttccagttttgataccgtctgACAGATGAGCGTTTCGt > 1:2521101‑M1/33‑49 (MQ=255) ttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa > 1:731059/1‑71 (MQ=255) tGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa < 1:3529874/70‑1 (MQ=255) caactcatcttccagttttgataccgtctgACAGATGAGCGTTTCGTcc < 1:4184120‑M1/19‑1 (MQ=255) gCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaa < 1:3883502/66‑1 (MQ=255) tctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGttt < 1:184910/40‑1 (MQ=255) ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTa > 1:2958386/1‑59 (MQ=255) ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTgg > 1:209406/1‑69 (MQ=255) ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTgg > 1:2597301/1‑69 (MQ=255) ttttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTgg > 1:3644877/1‑68 (MQ=255) ttttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGa < 1:1145344/69‑1 (MQ=255) ttttACCGCCGCCGCCAGACAGATACAGATGAGCGTTTCGTCCATCAGTCAGACGGTAt > 1:2618059/1‑59 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGt > 1:3929344/1‑55 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa > 1:734378/1‑62 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGaa < 1:1276399/68‑1 (MQ=255) ttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGAt > 1:3830264/1‑71 (MQ=255) tACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGAt > 1:3726894/1‑70 (MQ=255) cgccgccgcCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGa < 1:1168497/66‑1 (MQ=255) ccgccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg < 1:3254776/71‑1 (MQ=255) cgccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg > 1:1489894/1‑70 (MQ=255) cgccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg > 1:1770265/1‑70 (MQ=255) gccgccAGACAGCTACAGATGAGCGTTTCGTCCAtcag < 1:4206452/38‑1 (MQ=255) gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaaa > 1:3078695/1‑54 (MQ=255) gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTg > 1:196906/1‑69 (MQ=255) gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCa < 1:2629948/71‑1 (MQ=255) ccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAg > 1:4471232/1‑71 (MQ=255) cgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCaaa < 1:1282276/51‑1 (MQ=255) ccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGt > 1:2889197/1‑70 (MQ=255) cAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTa < 1:395263/70‑1 (MQ=255) gACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAg > 1:2269371/1‑71 (MQ=255) gACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAg > 1:2602676/1‑71 (MQ=255) aCAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAg > 1:1972848/1‑70 (MQ=255) aGCTACAGATGTGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTaa < 1:398332/66‑1 (MQ=255) cTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGtt < 1:1184619/71‑1 (MQ=255) ACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGa < 1:3549271‑M1/45‑1 (MQ=255) | GACTAAAACGCATGTCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTT > AP009048/3389382‑3389520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |